View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20548_low_14 (Length: 322)
Name: NF20548_low_14
Description: NF20548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20548_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 146; Significance: 7e-77; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 7 - 164
Target Start/End: Complemental strand, 41199667 - 41199510
Alignment:
| Q |
7 |
gaatcttgaaataaggcaattaaatcatgtcataaagctagagtcagaaagcagaagctgcgttgcttttctgcttgaaaatcgtatttcaagttgttaa |
106 |
Q |
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| T |
41199667 |
gaatcttgaaataaggcaatcaaatcatgtcataaagctagagtcagaaagcagaagctgcattgcttttctgcctgaaaatcgtatttcaagttgttaa |
41199568 |
T |
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| Q |
107 |
gacttttgtccaatgaaaaacaaagttgtaaaaacatgatttgtcatcaaactcagtt |
164 |
Q |
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| T |
41199567 |
gacttttgtccaatgaaaaacaaagttgtaaaaacatgatttgtcatcaaactcagtt |
41199510 |
T |
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Target: chr2; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 171 - 305
Target Start/End: Complemental strand, 41199468 - 41199334
Alignment:
| Q |
171 |
acatgatgtgataattaacttatggttcctcattttgattcgtccaacaaaggcgggaaccaactaaattcctcaaagataaaacaaatgcaaagcatat |
270 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
41199468 |
acatgatgtgataattaacttacagttcctcattttgattcgtccaacaatggcgggaaccaactaaattcctcaaagataaaacaaatgcaaaacatat |
41199369 |
T |
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| Q |
271 |
tttatcaaatacaatgaaactaaaatctgttctgt |
305 |
Q |
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| T |
41199368 |
aatatcaaatacagtgaaactaaaatctgttctgt |
41199334 |
T |
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