View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20548_low_15 (Length: 304)

Name: NF20548_low_15
Description: NF20548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20548_low_15
NF20548_low_15
[»] chr4 (3 HSPs)
chr4 (2-298)||(48041259-48041564)
chr4 (148-193)||(40962796-40962841)
chr4 (148-184)||(32303802-32303838)
[»] chr2 (2 HSPs)
chr2 (238-293)||(27332779-27332834)
chr2 (238-291)||(18206870-18206923)
[»] chr6 (2 HSPs)
chr6 (148-204)||(19222290-19222346)
chr6 (150-293)||(28617123-28617267)
[»] chr1 (2 HSPs)
chr1 (151-203)||(3378187-3378239)
chr1 (148-184)||(42294614-42294650)
[»] chr3 (1 HSPs)
chr3 (148-183)||(50561735-50561770)
[»] chr7 (1 HSPs)
chr7 (242-291)||(21066224-21066273)
[»] chr5 (1 HSPs)
chr5 (148-184)||(15105919-15105955)


Alignment Details
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 2 - 298
Target Start/End: Complemental strand, 48041564 - 48041259
Alignment:
Q  2 aaccaccatttatgtgactttttaagtaacgagtgattgaacggtgaaaatcaattgacaatgtaaaaatgttgtacagttccactgtatgaattagatc 101  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48041564 aaccaccatttatgtgactttttaagtaacaagtgattgaacggtgaaaatcaattgacaatgtaaaaatgttgtacagttccactgtatgaattagatc 48041465  T
Q  102 cttgtaaaaataataaagaatattttttccatatcagcgtcattac------aattctgctctttagccaacacaaaacactcgcgcccatctgaattga 195  Q
    |||||||||||| |||||||||||||||||||| ||||||||||||      ||||||||||||||||||||||||||||||||||||||| ||||||||    
T  48041464 cttgtaaaaatagtaaagaatattttttccataccagcgtcattacaatctgaattctgctctttagccaacacaaaacactcgcgcccatttgaattga 48041365  T
Q  196 tcattatacctatacgtgagt---atcacgcaccttatatgcctatgcgtgacttaagtgtatatgacaacaacacaaaaacataacacttcacttttct 292  Q
    |||||||||||||  ||||||    ||||||| |||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||    
T  48041364 tcattatacctatgtgtgagttaactcacgcatcttatatgcctatgcgtgacttaagtgtatgtgacagcaacacaaaaacataacacttcacttttct 48041265  T
Q  293 tctcac 298  Q
    | ||||    
T  48041264 tttcac 48041259  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 193
Target Start/End: Complemental strand, 40962841 - 40962796
Alignment:
Q  148 aattctgctctttagccaacacaaaacactcgcgcccatctgaatt 193  Q
    ||||||||||||   ||||||||||||||||||||||| |||||||    
T  40962841 aattctgctcttctcccaacacaaaacactcgcgcccaactgaatt 40962796  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 148 - 184
Target Start/End: Original strand, 32303802 - 32303838
Alignment:
Q  148 aattctgctctttagccaacacaaaacactcgcgccc 184  Q
    |||||||||||| | ||||||||||||||||||||||    
T  32303802 aattctgctcttcacccaacacaaaacactcgcgccc 32303838  T

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Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 238 - 293
Target Start/End: Original strand, 27332779 - 27332834
Alignment:
Q  238 tgcgtgacttaagtgtatatgacaacaacacaaaaacataacacttcacttttctt 293  Q
    ||||||||||| |||||||||||| ||||||| |||||||||||||||||||||||    
T  27332779 tgcgtgacttacgtgtatatgacagcaacacataaacataacacttcacttttctt 27332834  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 238 - 291
Target Start/End: Complemental strand, 18206923 - 18206870
Alignment:
Q  238 tgcgtgacttaagtgtatatgacaacaacacaaaaacataacacttcacttttc 291  Q
    |||||||||||||||||||||||||||| ||| |||||| || |||||||||||    
T  18206923 tgcgtgacttaagtgtatatgacaacaaaacagaaacattacccttcacttttc 18206870  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 148 - 204
Target Start/End: Original strand, 19222290 - 19222346
Alignment:
Q  148 aattctgctctttagccaacacaaaacactcgcgcccatctgaattgatcattatac 204  Q
    |||||||||||||||| |||||||||| ||||||| || ||||||||| ||||||||    
T  19222290 aattctgctctttagctaacacaaaacgctcgcgctcaactgaattgaccattatac 19222346  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 150 - 293
Target Start/End: Complemental strand, 28617267 - 28617123
Alignment:
Q  150 ttctgctctttagccaacacaaaacactcgcgcccatctgaattgatcattatacctatacgtgagta---tcacgcaccttat-atgcctatgcgtgac 245  Q
    |||| |||||||  ||||||||||| || ||| ||| |||||||||   |||||||| | |||||||    |||| |||||||| |||||| ||||||||    
T  28617267 ttctactctttaatcaacacaaaacgcttgcgtccaactgaattgactgttatacctctgcgtgagttaactcacacaccttattatgcctctgcgtgac 28617168  T
Q  246 ttaagtgtatatgacaacaacacaaaaacataacacttcacttttctt 293  Q
    ||||| ||||| |||||||   || || ||||||||||||||||||||    
T  28617167 ttaagagtataagacaaca---cagaaccataacacttcacttttctt 28617123  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 151 - 203
Target Start/End: Complemental strand, 3378239 - 3378187
Alignment:
Q  151 tctgctctttagccaacacaaaacactcgcgcccatctgaattgatcattata 203  Q
    |||||||||||||||||||||||| ||| |||||| ||||||||| |||||||    
T  3378239 tctgctctttagccaacacaaaacgctcccgcccaactgaattgaccattata 3378187  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 148 - 184
Target Start/End: Complemental strand, 42294650 - 42294614
Alignment:
Q  148 aattctgctctttagccaacacaaaacactcgcgccc 184  Q
    |||||||||||| | ||||||||||||||||||||||    
T  42294650 aattctgctcttcacccaacacaaaacactcgcgccc 42294614  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 148 - 183
Target Start/End: Complemental strand, 50561770 - 50561735
Alignment:
Q  148 aattctgctctttagccaacacaaaacactcgcgcc 183  Q
    |||||||||||||| |||||||||||||||||||||    
T  50561770 aattctgctctttatccaacacaaaacactcgcgcc 50561735  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 291
Target Start/End: Complemental strand, 21066273 - 21066224
Alignment:
Q  242 tgacttaagtgtatatgacaacaacacaaaaacataacacttcacttttc 291  Q
    |||||||||||||||||||| ||| ||| |||||| || |||||||||||    
T  21066273 tgacttaagtgtatatgacagcaaaacataaacattacccttcacttttc 21066224  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 148 - 184
Target Start/End: Original strand, 15105919 - 15105955
Alignment:
Q  148 aattctgctctttagccaacacaaaacactcgcgccc 184  Q
    |||||||||||||| ||| ||||||||||||||||||    
T  15105919 aattctgctctttatccagcacaaaacactcgcgccc 15105955  T

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