View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20548_low_18 (Length: 250)
Name: NF20548_low_18
Description: NF20548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20548_low_18 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 14 - 250
Target Start/End: Original strand, 38438522 - 38438758
Alignment:
| Q |
14 |
agacctgatcgacccaatgacaaaaaacaaactcaaatgggtgaaacaaatcaaccctaggaagtataaaatactcatccttgtccagaaaaacaatctc |
113 |
Q |
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|||||||||||| ||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
38438522 |
agacctgatcgatccagtgacaaaaaacaaactcaaatgggtgatacaaatcaaccctaggaagtataaaacactcatccttgtccagaaaaacaatctc |
38438621 |
T |
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| Q |
114 |
acacagctgagcttgcacaatctagcggatccgcttgcggaaccacaactaaattgcnnnnnnngaagacagtgtaaaaagggaataataacagaccaaa |
213 |
Q |
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|||||| ||||||||||||||||||||||||||||| | |||||||||||||||||| |||||||||||||||| ||||||||||||||||||| |
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| T |
38438622 |
acacagatgagcttgcacaatctagcggatccgcttaccgaaccacaactaaattgcaaaaaaagaagacagtgtaaaaacggaataataacagaccaaa |
38438721 |
T |
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| Q |
214 |
ctatttgacaacgaggtatgaacctaaccgccatcac |
250 |
Q |
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|||||||||||||||||||||||||||||| |||||| |
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| T |
38438722 |
ctatttgacaacgaggtatgaacctaaccgtcatcac |
38438758 |
T |
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