View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20548_low_20 (Length: 247)

Name: NF20548_low_20
Description: NF20548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20548_low_20
NF20548_low_20
[»] chr4 (2 HSPs)
chr4 (11-95)||(48041157-48041241)
chr4 (180-222)||(48041031-48041073)
[»] chr6 (1 HSPs)
chr6 (17-95)||(18791041-18791119)
[»] chr7 (3 HSPs)
chr7 (22-95)||(12625131-12625208)
chr7 (20-72)||(21066136-21066188)
chr7 (17-74)||(6716081-6716138)
[»] chr1 (2 HSPs)
chr1 (17-95)||(43785136-43785218)
chr1 (25-74)||(37313603-37313652)
[»] chr3 (1 HSPs)
chr3 (17-95)||(19195710-19195792)
[»] chr2 (1 HSPs)
chr2 (19-95)||(27332865-27332944)
[»] chr5 (2 HSPs)
chr5 (12-64)||(11798901-11798953)
chr5 (36-83)||(8431072-8431119)


Alignment Details
Target: chr4 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 11 - 95
Target Start/End: Complemental strand, 48041241 - 48041157
Alignment:
Q  11 cccttaaagtgcgaatttcacaaaactcaagcaaatcatcatcaaatcacgcaattaaacaagtgttgcttattctacttcattg 95  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48041241 cccttcaagtgcgaatttcacaaaactcaagcaaatcatcatcaaatcacgcaattaaacaagtgttgcttattctacttcattg 48041157  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 180 - 222
Target Start/End: Complemental strand, 48041073 - 48041031
Alignment:
Q  180 gattgttagtgatgaattaagttaggcattatgacttttgtag 222  Q
    ||||||||||||||||||||||||||||||| |||||||||||    
T  48041073 gattgttagtgatgaattaagttaggcattacgacttttgtag 48041031  T

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Target: chr6 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 17 - 95
Target Start/End: Complemental strand, 18791119 - 18791041
Alignment:
Q  17 aagtgcgaatttcacaaaactcaagcaaatcatcatcaaatcacgcaattaaacaagtgttgcttattctacttcattg 95  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||    
T  18791119 aagtgcgaatttcaccaaactcaagcaaatcatcatcaaatcacgcaattgaacaagtgttgcttattctacatcattg 18791041  T

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Target: chr7 (Bit Score: 57; Significance: 6e-24; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 22 - 95
Target Start/End: Original strand, 12625131 - 12625208
Alignment:
Q  22 cgaatttcacaaaactcaagcaaatcatcatcaaatcacgcaattaaac----aagtgttgcttattctacttcattg 95  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||    |||||||||||||||||||||||||    
T  12625131 cgaatttcacaaaactcaagcaaatcatcatcaaatcacgcaattgaacaagtaagtgttgcttattctacttcattg 12625208  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 20 - 72
Target Start/End: Complemental strand, 21066188 - 21066136
Alignment:
Q  20 tgcgaatttcacaaaactcaagcaaatcatcatcaaatcacgcaattaaacaa 72  Q
    ||||| |||||| |||||||||||||||||||||||||| ||||||| |||||    
T  21066188 tgcgattttcaccaaactcaagcaaatcatcatcaaatctcgcaattgaacaa 21066136  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 74
Target Start/End: Complemental strand, 6716138 - 6716081
Alignment:
Q  17 aagtgcgaatttcacaaaactcaagcaaatcatcatcaaatcacgcaattaaacaagt 74  Q
    |||||||| |||||| |||||||| ||||||| ||||||||||||||| | |||||||    
T  6716138 aagtgcgattttcaccaaactcaaccaaatcaacatcaaatcacgcaaatcaacaagt 6716081  T

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Target: chr1 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 17 - 95
Target Start/End: Complemental strand, 43785218 - 43785136
Alignment:
Q  17 aagtgcgaatttcacaaaactcaagcaaatcatcatcaaatcacgcaattaaac----aagtgttgcttattctacttcattg 95  Q
    |||||| |||||||| |||||||||||||||||||||||||||||||||| |||    |||||||||||||||||||||||||    
T  43785218 aagtgcaaatttcaccaaactcaagcaaatcatcatcaaatcacgcaattgaacaagtaagtgttgcttattctacttcattg 43785136  T

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Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 25 - 74
Target Start/End: Complemental strand, 37313652 - 37313603
Alignment:
Q  25 atttcacaaaactcaagcaaatcatcatcaaatcacgcaattaaacaagt 74  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||    
T  37313652 atttcacaaaactcaagcaaatcatcatcaaatcacgcaattgaacaagt 37313603  T

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Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 17 - 95
Target Start/End: Original strand, 19195710 - 19195792
Alignment:
Q  17 aagtgcgaatttcacaaaactcaagcaaatcatcatcaaatcacgcaattaaac----aagtgttgcttattctacttcattg 95  Q
    |||||||| |||||| ||||||||||||||||||||||||||||| |||| |||    |||||||||||||||||| ||||||    
T  19195710 aagtgcgattttcaccaaactcaagcaaatcatcatcaaatcacgtaattgaacaagtaagtgttgcttattctacatcattg 19195792  T

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Target: chr2 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 19 - 95
Target Start/End: Original strand, 27332865 - 27332944
Alignment:
Q  19 gtgcgaatttcacaaaactcaagcaaatcatcatcaaatcacgcaattaaacaagt--gt-tgcttattctacttcattg 95  Q
    |||||||||||||||||||||| ||||||||| ||||||||||||||| |||||||  || | |||||||||||||||||    
T  27332865 gtgcgaatttcacaaaactcaaccaaatcatcgtcaaatcacgcaattgaacaagtaagtgttcttattctacttcattg 27332944  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 12 - 64
Target Start/End: Original strand, 11798901 - 11798953
Alignment:
Q  12 ccttaaagtgcgaatttcacaaaactcaagcaaatcatcatcaaatcacgcaa 64  Q
    |||| |||||||||||| ||||||||||| ||||||| |||||||||||||||    
T  11798901 ccttcaagtgcgaattttacaaaactcaaccaaatcaacatcaaatcacgcaa 11798953  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 83
Target Start/End: Original strand, 8431072 - 8431119
Alignment:
Q  36 ctcaagcaaatcatcatcaaatcacgcaattaaacaagtgttgcttat 83  Q
    ||||| ||||||| ||||||||||||||| | ||||||||||||||||    
T  8431072 ctcaaccaaatcaacatcaaatcacgcaaatcaacaagtgttgcttat 8431119  T

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