View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20548_low_22 (Length: 237)
Name: NF20548_low_22
Description: NF20548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20548_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 182; Significance: 2e-98; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 19 - 220
Target Start/End: Complemental strand, 26095376 - 26095175
Alignment:
| Q |
19 |
cccattacaacagatttagggttaattgccacaccttatgactatggagcagggggaataacaacaactgaaccactccaaccagggctcgtttatgaaa |
118 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26095376 |
cccattgcaacagatttagggttaattgccacaccttatgactatggagctggggggataacaacaactgaaccactccaaccagggctcgtttatgaaa |
26095277 |
T |
|
| Q |
119 |
ccagcaccattgactacttgaactacttgtgttacataggatataacacaaccaccattaaggttatttcaaaaactgtccctgatagtttcaactgccc |
218 |
Q |
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|||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26095276 |
ccagcaccattgactacttgaacttcttgtgttatataggatataacacaaccaccattaaggttatttcaaaaactgtccctgatagtttcaactgccc |
26095177 |
T |
|
| Q |
219 |
ta |
220 |
Q |
| |
|
|| |
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|
| T |
26095176 |
ta |
26095175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 19 - 218
Target Start/End: Original strand, 48374827 - 48375026
Alignment:
| Q |
19 |
cccattacaacagatttagggttaattgccacaccttatgactatggagcagggggaataacaacaactgaaccactccaaccagggctcgtttatgaaa |
118 |
Q |
| |
|
|||||||| ||||||||||||| | |||||||||||||||||||||||||||||| |||||||||| |||| || |||||||||| ||||||||||||| |
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|
| T |
48374827 |
cccattactacagatttagggtcagttgccacaccttatgactatggagcaggggacataacaacaattgaatcattccaaccaggtctcgtttatgaaa |
48374926 |
T |
|
| Q |
119 |
ccagcaccattgactacttgaactacttgtgttacataggatataacacaaccaccattaaggttatttcaaaaactgtccctgatagtttcaactgccc |
218 |
Q |
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| |||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
48374927 |
ctagcaccattgactacttgaattacttgtgttacataggatacaacacaaccactattaaggttatttcaaaaactgtccctgatactttcaactgccc |
48375026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 19 - 220
Target Start/End: Complemental strand, 53430989 - 53430788
Alignment:
| Q |
19 |
cccattacaacagatttagggttaattgccacaccttatgactatggagcagggggaataacaacaactgaaccactccaaccagggctcgtttatgaaa |
118 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||| | ||||||| |||||||| || || |||||| || |||||||||| |
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|
| T |
53430989 |
cccattacaacagatttagggtcgattgccacaccttatgactatggagcaggtgaaataacaccaactgaatcataccgaccaggtcttgtttatgaaa |
53430890 |
T |
|
| Q |
119 |
ccagcaccattgactacttgaactacttgtgttacataggatataacacaaccaccattaaggttatttcaaaaactgtccctgatagtttcaactgccc |
218 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
53430889 |
ccagcaccattgactacttgaacttcttgtgttacataggatataacacaacaactattaaggttatttcaaaaactgtccctgataatttcaactgccc |
53430790 |
T |
|
| Q |
219 |
ta |
220 |
Q |
| |
|
|| |
|
|
| T |
53430789 |
ta |
53430788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 19 - 220
Target Start/End: Complemental strand, 53423027 - 53422825
Alignment:
| Q |
19 |
cccattacaacagatttagggttaattgccacaccttatgactatggagcagggggaataacaacaactgaaccactccaaccagggctcgtttatgaaa |
118 |
Q |
| |
|
||||||||||| |||||||||| |||||||||||||||||||||||||||||||| ||| |||| | ||||| || ||||||||||||| |||||||||| |
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|
| T |
53423027 |
cccattacaacggatttagggtcaattgccacaccttatgactatggagcaggggaaattacaatatctgaatcattccaaccagggctagtttatgaaa |
53422928 |
T |
|
| Q |
119 |
ccagcaccattgactacttgaactacttgtgttacataggatataacacaa-ccaccattaaggttatttcaaaaactgtccctgatagtttcaactgcc |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||| || |||| |||| ||||||| ||| |||||||| ||||||| |||||||| |||| |
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|
| T |
53422927 |
ccagcaccattgactacttgaactacttgtgttacctaggatacaatacaacccacaattaaggctatctcaaaaaccgtccctggtagtttcagttgcc |
53422828 |
T |
|
| Q |
218 |
cta |
220 |
Q |
| |
|
||| |
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|
| T |
53422827 |
cta |
53422825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 19 - 218
Target Start/End: Complemental strand, 53307829 - 53307630
Alignment:
| Q |
19 |
cccattacaacagatttagggttaattgccacaccttatgactatggagcagggggaataacaacaactgaaccactccaaccagggctcgtttatgaaa |
118 |
Q |
| |
|
|||||||| || |||| |||| |||||||||||||||||||||||||||||| | ||||||||||||||||||| ||||||| ||||| |||||||||| |
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|
| T |
53307829 |
cccattaccacgaatttggggtcaattgccacaccttatgactatggagcaggagaaataacaacaactgaaccattccaacccgggctagtttatgaaa |
53307730 |
T |
|
| Q |
119 |
ccagcaccattgactacttgaactacttgtgttacataggatataacacaaccaccattaaggttatttcaaaaactgtccctgatagtttcaactgccc |
218 |
Q |
| |
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| ||||||||||||||| | |||||||||||||||||||||| || |||||||| | ||| |||| || ||||| | ||||||||||||||||||||| |
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| T |
53307729 |
ctagcaccattgactacctaaactacttgtgttacataggattgaatacaaccacggtgaagattatctctaaaaccgcccctgatagtttcaactgccc |
53307630 |
T |
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