View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20548_low_3 (Length: 510)
Name: NF20548_low_3
Description: NF20548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20548_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 407; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 18 - 500
Target Start/End: Complemental strand, 38439237 - 38438756
Alignment:
| Q |
18 |
gtaacttgcatctaaaattagttattctaaattccaaatatatttatacttaaatttacctagacaagacaatagatacaataatcagactgagtctcta |
117 |
Q |
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| T |
38439237 |
gtaacatgcatctaaaattagttattctaaaatccaaatatatttatacttaaatttacctagagaagacaatagatacaataatcagactgagtctcta |
38439138 |
T |
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| Q |
118 |
aagattacaataactagtgtgctttacatgtttgctaaagaacgtgtcacttaattagattcccaaagaataaatttacaatnnnnnnnncaaggtgcaa |
217 |
Q |
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| T |
38439137 |
aagattacaataactagtgtgctttacatgtttgctaaagaacgtgtcacttaattagattcccaaagaataaatttacaataaaaaaaacaaggtgcaa |
38439038 |
T |
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| Q |
218 |
agtgacagatcctttaaaaatgtgaagcactattattcccatttagcaaggatcatcttcatatttttcccagataaacattgctccaaacgttttagtc |
317 |
Q |
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| T |
38439037 |
agtgacagatcctttaaaaatatgaagcactattattcccatttagtaaggatcatcttcatatttttcccagataaacattgctccaaacgttttagtc |
38438938 |
T |
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| Q |
318 |
acccttattggcttataaacaaaacaaagagttgaatatttgcttaaaaaccacaggcataatatattgaaaaacatcaaggattgctcctgtttcacat |
417 |
Q |
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| T |
38438937 |
acccttactggcttataaacaaaacaaagggttcaatatttgataaaaaatcacaggcataatatatt-aaaaacatcaaggattgctcctgtttcacat |
38438839 |
T |
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| Q |
418 |
caaattgattgacaaaaaatggttgcttttgagacttgatacggtggtcgatgcaatgggtggtggatggacttgtatctgtg |
500 |
Q |
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| T |
38438838 |
caaattgattgacaaaaaatggttgcttttgagacttgatacggtggtcgatgcaatgggtggtggatggacttgtatctgtg |
38438756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 434 - 496
Target Start/End: Original strand, 15666859 - 15666921
Alignment:
| Q |
434 |
aaatggttgcttttgagacttgatacggtggtcgatgcaatgggtggtggatggacttgtatc |
496 |
Q |
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| T |
15666859 |
aaatggctgctttttagacttgatgttgtggttgatgcagtgggtggtggatggacttgtatc |
15666921 |
T |
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