View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20548_low_4 (Length: 491)
Name: NF20548_low_4
Description: NF20548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20548_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 20 - 483
Target Start/End: Original strand, 36606170 - 36606639
Alignment:
| Q |
20 |
tcggggacattggaaaaatgatgactttatttttacaattggacaataagtttatgattgttgaagtctttaaagtggtgttcaccttggataattgtgg |
119 |
Q |
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| T |
36606170 |
tcggtgacattggaaaaatgatgactttatttttacaattggacaataagcttatgattgttgaagtcttgacagtggtgttcaccttggataattgtgg |
36606269 |
T |
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| Q |
120 |
cagatggcgacattctccatgcttgggcaataaactgacataaagattacaaatgacattatccatgcttgatataaaacacttataatgtgaaggtatg |
219 |
Q |
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| T |
36606270 |
cagatggcgacattctccaagcttgggcaataaacggacataaagattacaaatgacattctccatgcttgatataaaacacttataatgtgaaggtatg |
36606369 |
T |
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| Q |
220 |
tattgtagagatcattttggccatgaagcaaaagtaggtatataacacgagcatggagaatgctagccacatgtagtgatttgagatgacctgaccagtc |
319 |
Q |
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| T |
36606370 |
tattgtatagatcattttggccatgaagcaaaagtaggtatataacaggagcatggagaatgctaaccacatgtagtgatttgagatgacctgaccagtc |
36606469 |
T |
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| Q |
320 |
atactcattgataatgatttatcatgtgaccttaacctatgttttgatatccatgttctttccctatattgttgtcaatccttaacgattaacaatgaag |
419 |
Q |
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| T |
36606470 |
atactcattaataatgatttatcatgtgaccttaacttatgttttgatatccatgttctttccatatatagttgtaaatccttaacgattaacaatgaag |
36606569 |
T |
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| Q |
420 |
caa------taccttcactaaaaagaacagtgaagcaattcaattaattcggtttgagttatcctatgct |
483 |
Q |
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| T |
36606570 |
caagttctctaccttcactaaaaagaacagtgaagcaattcaattaattcaatttgagttatcttatgct |
36606639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 146; Significance: 1e-76; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 25 - 298
Target Start/End: Complemental strand, 27539881 - 27539604
Alignment:
| Q |
25 |
gacattggaaaaatgatgactttatttttacaattggacaataagtttatgattgttgaagtctttaaagtggtgttcaccttggataattgtggcagat |
124 |
Q |
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|||||||| ||||||||||||||||||||||| |||||||||||| | ||| ||||||| ||||| | | ||||||||||||||||||||||||||| |
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| T |
27539881 |
gacattgggaaaatgatgactttatttttacatttggacaataagcatttgactgttgaatactttacaatattgttcaccttggataattgtggcagat |
27539782 |
T |
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| Q |
125 |
ggcgacattctccatgcttgggcaataaactgacataaagattacaaatgacattatccatgcttgat------ataaaacacttataatgtgaaggtat |
218 |
Q |
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| T |
27539781 |
ggcgacattctccatgtttgggcaataaactgacataaagattacaaatgacattatctatgcttgatataattataaaacacttatgatgtgaaggtat |
27539682 |
T |
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| Q |
219 |
gtattgtagagatcattttggccatgaagcaaaagtaggtatataacacgagcatggagaatgctagccacatgtagtga |
298 |
Q |
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| T |
27539681 |
gtatcgtagagatcatattggttgtgaagcaaaagtagg--tatagcaagagcatagtgaatgctaaccacatgtagtga |
27539604 |
T |
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