View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20548_low_5 (Length: 470)
Name: NF20548_low_5
Description: NF20548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20548_low_5 |
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| [»] chr6 (8 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 375; Significance: 0; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 1 - 470
Target Start/End: Complemental strand, 23257577 - 23257105
Alignment:
| Q |
1 |
tgtttggtttaattttatttttggattgtagaataggaaatgtctatactacaacctttttaattggtagcataaattctgcatatgcataggttgaaat |
100 |
Q |
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| T |
23257577 |
tgtttggtttaattttatttttggattgtagaataggaaatgtctatactacaacctttttaattggtagcataaattctgcatatacataggttgaaat |
23257478 |
T |
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| Q |
101 |
tgaaaaggagtttctctttatagcttttatgtggattattaaatcactaatcaagcttaaagtgcatctgacttttattatatatgaaagaaaataattt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
23257477 |
tgaaaaggagtttctctttatagcttttatgtggattattaaatcactaatcaagcttaaagtgcatctgacttttattatatatgaaagaacataattt |
23257378 |
T |
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| Q |
201 |
gcaatttccaaatatagtctatcttgtcttattattcttatcttttgtaggacttcnnnnnnnngtctgctacgacgatctgggctgtga---aaattgg |
297 |
Q |
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| T |
23257377 |
gcaatttccaaatatagtctatcttgtcttatttttcttctcttttgtaggactttaaaaaaaagtctgttacgacgatctgggctgtgactgcaattgg |
23257278 |
T |
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| Q |
298 |
ggtgcatacgccacatatcaccgtaatatcaaggattgtgatcgtttccgtgtgactacgaaccttgcttttctttggctgatttctgtcttttcatact |
397 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| ||||| |||||||||| |||||||||||||||||||||| || |
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| T |
23257277 |
ggtgcatacgccacatttcaccgtaatatcaaggattgtgatcgtttccatgtgactgcgaacattgcttttctgtggctgatttctgtcttttcatcct |
23257178 |
T |
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| Q |
398 |
ggcaaggaaaggtaccagagaagaatgaatgaaacttaagcagaaaccagacattaatatcttctgcaatttc |
470 |
Q |
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| T |
23257177 |
ggcaaggaaaggtaccagagaagaatgaatgaaacttaagcagaaaccagtaattaatatcttctgcaatttc |
23257105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 14 - 196
Target Start/End: Complemental strand, 23251590 - 23251405
Alignment:
| Q |
14 |
tttatttttggattgtagaataggaaatgtctatactacaacctttttaattggtagcataaattctgcatatgcataggttgaaattgaaaaggagttt |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |||| ||||||||| ||||||||||| |||||||||| ||| |
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| T |
23251590 |
tttatttttggattgtagaataggaaatgtctatactacaaccgtttgaattggtagcgtaaactctgcatatacataggttgaatttgaaaaggaattt |
23251491 |
T |
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| Q |
114 |
ctctttatagcttttatgtggattattaaatcactaatcaagcttaaagtgcatctga---cttttattatatatgaaagaaaata |
196 |
Q |
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| T |
23251490 |
atttttatagcttttatgtgaattattaaatcactaatcaagcgtaaagtgcatctcatcctttttattatatatgaaagaaaata |
23251405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 7 - 189
Target Start/End: Complemental strand, 23247186 - 23247001
Alignment:
| Q |
7 |
gtttaattttatttttggattgtagaataggaaatgtctatactacaacctttttaattggtagcataaattctgcatatgcataggttgaaattgaaaa |
106 |
Q |
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||||| |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||| |||| |
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| T |
23247186 |
gtttacttttctttttggattgtaggataggaaatgtctatactacaacctttttaattggtagcataaatactgcatatacataggttaaaattaaaaa |
23247087 |
T |
|
| Q |
107 |
ggagtttctctttatagc-ttttatgtggattattaaatcactaatcaagcttaaagtgcatc---tgacttttattatatatgaaa |
189 |
Q |
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| T |
23247086 |
ggaatttctttttatagctttttatgt-gaatattaaatcactaatcgagcatatagtgcatctcatgacttttattatatatgaaa |
23247001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 23266138 - 23266061
Alignment:
| Q |
1 |
tgtttggtttaattttatttttggattgtagaataggaaatgtctatactacaacctttttaattggtagcataaatt |
78 |
Q |
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| T |
23266138 |
tgtttggtttaactttatttttggattgtagaataggaaatgtctatactacaacctttttaattggtagcataaatt |
23266061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 356 - 470
Target Start/End: Complemental strand, 23251188 - 23251074
Alignment:
| Q |
356 |
cgaaccttgcttttctttggctgatttctgtcttttcatactggcaaggaaaggtaccagagaagaatgaatgaaacttaagcagaaaccagacattaat |
455 |
Q |
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|||||||||||||| | || ||||||||||| ||||||| ||||||||||||| ||| |||||||||||||||||| ||||||||| |||| |||||| |
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| T |
23251188 |
cgaaccttgcttttatgtgtctgatttctgtgttttcatcctggcaaggaaagctacaagagaagaatgaatgaaatttaagcagatgccagtaattaat |
23251089 |
T |
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| Q |
456 |
atcttctgcaatttc |
470 |
Q |
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| T |
23251088 |
atcctctgcaatttc |
23251074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 265 - 339
Target Start/End: Complemental strand, 23251267 - 23251190
Alignment:
| Q |
265 |
gtctgctacgacgatctgggctgtgaa---aattggggtgcatacgccacatatcaccgtaatatcaaggattgtgat |
339 |
Q |
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| T |
23251267 |
gtctgttacgacgatctgggctgtgacttcaattggggtgcattcgctgcatttcaccgtcatatcaaggattgtgat |
23251190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 111 - 192
Target Start/End: Complemental strand, 23266056 - 23265982
Alignment:
| Q |
111 |
tttctctttatagcttttatgtggattattaaatcactaatcaagcttaaagtgcatctgacttttattatatatgaaagaa |
192 |
Q |
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| T |
23266056 |
tttcttttcatagcttttatgtgaatttttaaatcactaatcaatcataaagtg-------cttttattatatatgaaagaa |
23265982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 54
Target Start/End: Complemental strand, 23283201 - 23283160
Alignment:
| Q |
13 |
ttttatttttggattgtagaataggaaatgtctatactacaa |
54 |
Q |
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| T |
23283201 |
ttttttttttggattgtagaattgaaaatgtctatactacaa |
23283160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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