View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20548_low_7 (Length: 438)

Name: NF20548_low_7
Description: NF20548
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20548_low_7
NF20548_low_7
[»] chr8 (22 HSPs)
chr8 (6-428)||(15626451-15626874)
chr8 (6-428)||(15650208-15650638)
chr8 (6-330)||(15628452-15628786)
chr8 (192-428)||(15608357-15608594)
chr8 (6-273)||(15652358-15652629)
chr8 (195-428)||(15616871-15617105)
chr8 (195-428)||(15640063-15640283)
chr8 (6-158)||(15608612-15608764)
chr8 (277-428)||(15652169-15652321)
chr8 (6-173)||(12063185-12063352)
chr8 (292-428)||(15995455-15995592)
chr8 (193-301)||(12063380-12063488)
chr8 (101-248)||(15995179-15995330)
chr8 (198-290)||(12068080-12068172)
chr8 (370-428)||(15628394-15628452)
chr8 (343-423)||(15971980-15972059)
chr8 (105-152)||(12068038-12068085)
chr8 (205-296)||(15971765-15971856)
chr8 (370-423)||(12068310-12068363)
chr8 (128-176)||(15971692-15971740)
chr8 (6-77)||(15971589-15971659)
chr8 (6-54)||(12067986-12068034)
[»] chr2 (1 HSPs)
chr2 (338-411)||(2660323-2660397)


Alignment Details
Target: chr8 (Bit Score: 333; Significance: 0; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 6 - 428
Target Start/End: Complemental strand, 15626874 - 15626451
Alignment:
Q  6 aataaggaggacgcaagatctggaaaatttaatgcaactgtatcaatatctagtgttacaggttaggcattttcaatcgaagcaaagccacgctattcaa 105  Q
    |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  15626874 aataaggaggacacaagatctggaaaatttaatgcaact-tatcaatatctagtgttacaggttaggcattttcaatcgaaacaaagccacgctattcaa 15626776  T
Q  106 ttaggtattttcaattaaaactaggtgatcatatttttcagcatttaattagtctacttgacatttactagtaagtgtnnnnnnnncaaa-gacatttac 204  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         ||| |||||||||    
T  15626775 ttacgtattttcaattaaaactaggtgatcatatttttcagcatttaattagtctacttgacatttactagtaagtgtaaaaaaaaaaaaagacatttac 15626676  T
Q  205 ttgccaatcagaaaagcaaaacaaagtcagcagcaaaatgtgaagtcgtaaatgatttaaactgaaacagcaaccatgtaaatgataattttttagtacc 304  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  15626675 ttgccaatcagaaaagcaaaacaaagtcagcagcaaaatttgaagtcgtaaatgatttaaactgaaacaacaaccatgtaaatgataattttttagtacc 15626576  T
Q  305 gtttttatggaaccaacaaacgagat-gacgttggcattcaaactcaaagattaggtttagatttcttttagccaaaaagacagcaatggcggctgaact 403  Q
     ||||||||||||||||||||||||| || | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  15626575 atttttatggaaccaacaaacgagatcgatggtggcattcaaactcaaagattaggtttagatttcttttagccaaaaagacagcaatggcggctgaaca 15626476  T
Q  404 gcttcttgaacacttcaaatctctg 428  Q
    |||||||||||||||||||| ||||    
T  15626475 gcttcttgaacacttcaaatgtctg 15626451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 6 - 428
Target Start/End: Complemental strand, 15650638 - 15650208
Alignment:
Q  6 aataaggaggacgcaagatctggaaaatttaatgcaactgtatcaatatctagtgttacaggttaggcattttcaatcgaagcaaagccacgctattcaa 105  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  15650638 aataaggaggacacaagatctggaaaatttaatgcaactgtatcaatatctagtgttacaggttaggcattttcaatcgaaacaaagccacgctattcaa 15650539  T
Q  106 ttaggtattttcaattaaaactaggtgatcatatttttcagcatttaattagtctacttgacatttactagtaagtgtnnnnnnnn-------caaagac 198  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||               ||||| |    
T  15650538 ttaggtattttcaattaaaactaggtgatcatatttttcagcatttaattagtctacttgacatttactagtaagtgtaaaaaaaaaaaaaaacaaaggc 15650439  T
Q  199 atttacttgccaatcagaaaagcaaaacaaagtcagcagcaaaatgtgaagtcgtaaatgatttaaactgaaacagcaaccatgtaaatgataatttttt 298  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| || ||||||||||||||||    
T  15650438 atttacttgccaatcagaaaagcaaaacaaagtcagcagcaaaatttgaagtcgtaaatgatttaaactaaaacagcaacaatataaatgataatttttt 15650339  T
Q  299 agtaccgtttttatggaaccaacaaacgagat-gacgttggcattcaaactcaaagattaggtttagatttcttttagccaaaaagacagcaatggcggc 397  Q
    |||||||||||||||||||||||||||||||| || | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15650338 agtaccgtttttatggaaccaacaaacgagatcgatggtggcattcaaactcaaagattaggtttagatttcttttagccaaaaagacagcaatggcggc 15650239  T
Q  398 tgaactgcttcttgaacacttcaaatctctg 428  Q
    ||||| |||||||||||||||||||| ||||    
T  15650238 tgaacagcttcttgaacacttcaaatgtctg 15650208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 6 - 330
Target Start/End: Complemental strand, 15628786 - 15628452
Alignment:
Q  6 aataaggaggacgcaagatctggaaaatttaatgcaactgtatcaatatctagtgttacaggttaggcattttcaatcgaagcaaagccacgctattcaa 105  Q
    |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  15628786 aataaggaggacacaagatctggaaaatttaatgcaact-tatcaatatctagtgttacaggttaggcattttcaatcgaaacaaagccacgctattcaa 15628688  T
Q  106 ttaggtattttcaattaaaactaggtgatcatatttttcagcatttaattagtctacttgacatttactagtaagtgt----nnnnnnnncaaagacatt 201  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||             |||||||||    
T  15628687 ttacgtattttcaattaaaactaggtgatcatatttttcagcatttaattagtctacttgacatttactagtaagtgtgaaaaaaaaagaaaaagacatt 15628588  T
Q  202 tacttgccaatcagaaaagcaaaacaaagtcagcagcaaaatgtgaagtcgtaaatgatttaaactgaaacagcaaccat--------gtaaatgataat 293  Q
    ||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||  ||        ||||||||||||    
T  15628587 tacttgccaattagaaaagcaaaacaaagtaagcagcaaaatgtgaagtcgtaaatgatttaaactgaaacagcaa-aatgtgaagtcgtaaatgataat 15628489  T
Q  294 tttttagtaccgtttttatggaaccaacaaacgagat 330  Q
    |||||||||||||||||||||||||||||||||||||    
T  15628488 tttttagtaccgtttttatggaaccaacaaacgagat 15628452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 192 - 428
Target Start/End: Complemental strand, 15608594 - 15608357
Alignment:
Q  192 caaagacatttacttgccaatcagaaaagcaaaacaaagtcagcagcaaaatgtgaagtcgtaaatgatttaaactgaaacagcaaccatgtaaatgata 291  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15608594 caaagacatttacttgccaatcagaaaagcaaaacaaagtcagcagcaaaatgtgaagtcgtaaatgatttaaactgaaacagcaaccatgtaaatgata 15608495  T
Q  292 attttttagtaccgtttttatggaaccaacaaacgagat-gacgttggcattcaaactcaaagattaggtttagatttcttttagccaaaaagacagcaa 390  Q
    ||||||||||||||||||||||||||||||||||||||| || | |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15608494 attttttagtaccgtttttatggaaccaacaaacgagatcgatggtggcattcaaactcaaagattaggtttagatttcttttagccaaaaagacagcaa 15608395  T
Q  391 tggcggctgaactgcttcttgaacacttcaaatctctg 428  Q
    |||||||||||| |||||||||||||||||||| ||||    
T  15608394 tggcggctgaacagcttcttgaacacttcaaatgtctg 15608357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 6 - 273
Target Start/End: Complemental strand, 15652629 - 15652358
Alignment:
Q  6 aataaggaggacgcaagatctggaaaatttaatgcaactgtatcaatatctagtgttacaggttaggcattttcaatcgaagcaaagccacgctattcaa 105  Q
    |||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  15652629 aataagcaggacacaagatctggaaaatttaatgcaactgtatcaatatctagtgttacaggttaggcattttcaatcgaaacaaagccacgctattcaa 15652530  T
Q  106 ttaggtattttcaattaaaactaggtgatcatatttttcagcatttaattagtctacttgacatttactagtaagtgt----nnnnnnnncaaagacatt 201  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||             |||||||||    
T  15652529 ttaggtagtttcaattaaaactaggtgatcatatttttcagcatttaattagtctactttacatttactagtaagtgtaaaagaaaaaaaaaaagacatt 15652430  T
Q  202 tacttgccaatcagaaaagcaaaacaaagtcagcagcaaaatgtgaagtcgtaaatgatttaaactgaaaca 273  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15652429 tacttgccaatcagaaaagcaaaacaaagtcagcagcaaaatgtgaagtcgtaaatgatttaaactgaaaca 15652358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 195 - 428
Target Start/End: Complemental strand, 15617105 - 15616871
Alignment:
Q  195 agacatttacttgccaatcagaaaagcaaaacaaagtcagcagcaaaatgtgaagtcgtaaatgatttaaactgaaacagcaaccatgtaaatgataatt 294  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15617105 agacatttacttgccaatcagaaaagcaaaacaaagtcagcagcaaaatgtgaagtcgtaaatgatttaaactgaaacagcaaccatgtaaatgataatt 15617006  T
Q  295 ttttagtaccgtttttatggaaccaacaaacgagat-gacgttggcattcaaactcaaagattaggtttagatttcttttagccaaaaagacagcaatgg 393  Q
    |||||||||||||||||||||||||||||||||||| || | || |||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  15617005 ttttagtaccgtttttatggaaccaacaaacgagatcgatggtgtcattcaaactcaaagattaggtttagatatcttttagccaaaaagacagcaatgg 15616906  T
Q  394 cggctgaactgcttcttgaacacttcaaatctctg 428  Q
    ||||||||| |||||||||||||||||||| ||||    
T  15616905 cggctgaacagcttcttgaacacttcaaatgtctg 15616871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 195 - 428
Target Start/End: Complemental strand, 15640283 - 15640063
Alignment:
Q  195 agacatttacttgccaatcagaaaagcaaaacaaagtcagcagcaaaatgtgaagtcgtaaatgatttaaactgaaacagcaaccatgtaaatgataatt 294  Q
    |||||||||||||||||||||||||||||||||||||||              |||||||||||||||||||||||||||||||||||||||||||||||    
T  15640283 agacatttacttgccaatcagaaaagcaaaacaaagtca--------------agtcgtaaatgatttaaactgaaacagcaaccatgtaaatgataatt 15640198  T
Q  295 ttttagtaccgtttttatggaaccaacaaacgagat-gacgttggcattcaaactcaaagattaggtttagatttcttttagccaaaaagacagcaatgg 393  Q
    |||||||||||||||||||||||||||||||||||| || | || |||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  15640197 ttttagtaccgtttttatggaaccaacaaacgagatcgatggtgccattcaaactcaaagattaggtttagatatcttttagccaaaaagacagcaatgg 15640098  T
Q  394 cggctgaactgcttcttgaacacttcaaatctctg 428  Q
    ||||||||| |||||||||||||||||||| ||||    
T  15640097 cggctgaacagcttcttgaacacttcaaatgtctg 15640063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 6 - 158
Target Start/End: Complemental strand, 15608764 - 15608612
Alignment:
Q  6 aataaggaggacgcaagatctggaaaatttaatgcaactgtatcaatatctagtgttacaggttaggcattttcaatcgaagcaaagccacgctattcaa 105  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||    
T  15608764 aataaggaggacacaagatctggaaaatttaatgcaactgtatcaatatctagtgttgcaggttaggcattttcaatcgaaacaaagccacgctattcaa 15608665  T
Q  106 ttaggtattttcaattaaaactaggtgatcatatttttcagcatttaattagt 158  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15608664 ttaggtattttcaattaaaactaggtgatcatatttttcagcatttaattagt 15608612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 277 - 428
Target Start/End: Complemental strand, 15652321 - 15652169
Alignment:
Q  277 accatgtaaatgataattttttagtaccgtttttatggaaccaacaaacgagat-gacgttggcattcaaactcaaagattaggtttagatttcttttag 375  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| |    
T  15652321 accatgtaaatgataattttttagtaccgtttttatggaaccaacaaacgagatcgacggtggcattcaaactcaaagattaggtttagatttcttttgg 15652222  T
Q  376 ccaaaaagacagcaatggcggctgaactgcttcttgaacacttcaaatctctg 428  Q
    ||||||||| ||||||||||||||||| |||||||||||||||||||| ||||    
T  15652221 ccaaaaagaaagcaatggcggctgaacagcttcttgaacacttcaaatgtctg 15652169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 6 - 173
Target Start/End: Original strand, 12063185 - 12063352
Alignment:
Q  6 aataaggaggacgcaagatctggaaaatttaatgcaactgtatcaatatctagtgttacaggttaggcattttcaatcgaagcaaagccacgctattcaa 105  Q
    |||||| | ||| |||||||||||||||||||||  ||||||| |||||||||||||| || |||||||||| |||| ||  ||||||||| ||||||||    
T  12063185 aataagcaagacacaagatctggaaaatttaatgtgactgtataaatatctagtgttatagattaggcatttccaattgatacaaagccacactattcaa 12063284  T
Q  106 ttaggtattttcaattaaaactaggtgatcatatttttcagcatttaattagtctacttgacatttac 173  Q
    |||| ||||||||||| |||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  12063285 ttagctattttcaattgaaactaggtgatcatatttttcagcatttaaaaagtctacttgacatttac 12063352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 292 - 428
Target Start/End: Original strand, 15995455 - 15995592
Alignment:
Q  292 attttttagtaccgtttttatggaaccaacaaacgagat-gacgttggcattcaaactcaaagattaggtttagatttcttttagccaaaaagacagcaa 390  Q
    ||||||| |||||||||||| ||||||||||||| | || ||||  | |||||||||||  ||||||||||||||||| |||||||||||||||||||||    
T  15995455 attttttggtaccgtttttacggaaccaacaaactacattgacggcgacattcaaactcctagattaggtttagattttttttagccaaaaagacagcaa 15995554  T
Q  391 tggcggctgaactgcttcttgaacacttcaaatctctg 428  Q
    |||||||||||| |||||||||||||||||||| ||||    
T  15995555 tggcggctgaacagcttcttgaacacttcaaatgtctg 15995592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 193 - 301
Target Start/End: Original strand, 12063380 - 12063488
Alignment:
Q  193 aaagacatttacttgccaatcagaaaagcaaaacaaagtcagcagcaaaatgtgaagtcgtaaatgatttaaactgaaacagcaaccatgtaaatgataa 292  Q
    ||||| ||||||||||||||||||||||||||| ||||| |||||||||||||||| || ||||||| ||||||||| |||||||||||||  |||||||    
T  12063380 aaagatatttacttgccaatcagaaaagcaaaaaaaagttagcagcaaaatgtgaactcttaaatgaattaaactgagacagcaaccatgtgcatgataa 12063479  T
Q  293 ttttttagt 301  Q
    |||| ||||    
T  12063480 ttttatagt 12063488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 101 - 248
Target Start/End: Original strand, 15995179 - 15995330
Alignment:
Q  101 ttcaattaggtattttcaattaaaactaggtgatcatatttttcagcatttaattagtctacttgacatttactagtaagtgtnnnnnnnncaa----ag 196  Q
    ||||||||| |||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||  || ||         ||    ||    
T  15995179 ttcaattagctattttcaattaaaacaaggtgatcttatttttcagcatttaattagtctacttgacatttactagccagcgtaaaaaaaaaaaagagag 15995278  T
Q  197 acatttacttgccaatcagaaaagcaaaacaaagtcagcagcaaaatgtgaa 248  Q
    || ||||||||| | |||||||||||||||||||||||||||||||| ||||    
T  15995279 acttttacttgctactcagaaaagcaaaacaaagtcagcagcaaaatttgaa 15995330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 198 - 290
Target Start/End: Original strand, 12068080 - 12068172
Alignment:
Q  198 catttacttgccaatcagaaaagcaaaacaaagtcagcagcaaaatgtgaagtcgtaaatgatttaaactgaaacagcaaccatgtaaatgat 290  Q
    ||||||||  |||||||||||||||||||||||||||||| |||||||||| |||||||||| |||||||||||| ||||| |||||||||||    
T  12068080 catttactaaccaatcagaaaagcaaaacaaagtcagcagtaaaatgtgaactcgtaaatgaattaaactgaaactgcaacaatgtaaatgat 12068172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 370 - 428
Target Start/End: Complemental strand, 15628452 - 15628394
Alignment:
Q  370 ttttagccaaaaagacagcaatggcggctgaactgcttcttgaacacttcaaatctctg 428  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||    
T  15628452 ttttagccaaaaagacagcaatggcggctgaacagcttcttgaacacttcaaatgtctg 15628394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 343 - 423
Target Start/End: Original strand, 15971980 - 15972059
Alignment:
Q  343 caaactcaaagattaggtttagatttcttttagccaaaaagacagcaatggcggctgaactgcttcttgaacacttcaaat 423  Q
    ||||||| ||||||||||||||| || || ||||||||||||||| |||| ||||||||  ||||||||||||||||||||    
T  15971980 caaactccaagattaggtttagactt-ttgtagccaaaaagacagaaatgacggctgaatagcttcttgaacacttcaaat 15972059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 105 - 152
Target Start/End: Original strand, 12068038 - 12068085
Alignment:
Q  105 attaggtattttcaattaaaactaggtgatcatatttttcagcattta 152  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||    
T  12068038 attaggtattttcaattgaaactaggtgatcatatttttcagcattta 12068085  T

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Target: chr8; HSP #18
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 205 - 296
Target Start/End: Original strand, 15971765 - 15971856
Alignment:
Q  205 ttgccaatcagaaaagcaaaacaaagtcagcagcaaaatgtgaagtcgtaaatgatttaaactgaaacagcaaccatgtaaatgataatttt 296  Q
    |||||||||||||||   |||| || |||||| ||||||| ||| |||||||||| |||||||||||||| |||| |||||||||| |||||    
T  15971765 ttgccaatcagaaaatgcaaacgaaatcagcaacaaaatgcgaactcgtaaatgaattaaactgaaacagaaaccttgtaaatgatcatttt 15971856  T

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Target: chr8; HSP #19
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 370 - 423
Target Start/End: Original strand, 12068310 - 12068363
Alignment:
Q  370 ttttagccaaaaagacagcaatggcggctgaactgcttcttgaacacttcaaat 423  Q
    ||||| ||||||||||||||||||||| ||||| ||||||||||||||||||||    
T  12068310 ttttatccaaaaagacagcaatggcggttgaacagcttcttgaacacttcaaat 12068363  T

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Target: chr8; HSP #20
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 128 - 176
Target Start/End: Original strand, 15971692 - 15971740
Alignment:
Q  128 aggtgatcatatttttcagcatttaattagtctacttgacatttactag 176  Q
    ||||||||||| ||||||||||||||||||||| |||||||||||||||    
T  15971692 aggtgatcataattttcagcatttaattagtctgcttgacatttactag 15971740  T

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Target: chr8; HSP #21
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 6 - 77
Target Start/End: Original strand, 15971589 - 15971659
Alignment:
Q  6 aataaggaggacgcaagatctggaaaatttaatgcaactgtatcaatatctagtgttacaggttaggcattt 77  Q
    |||||||| ||||| |||||||||||||||||||  |||||||||||||| |||| || || ||||||||||    
T  15971589 aataaggaagacgcgagatctggaaaatttaatgtgactgtatcaatatc-agtgatatagattaggcattt 15971659  T

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Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 6 - 54
Target Start/End: Original strand, 12067986 - 12068034
Alignment:
Q  6 aataaggaggacgcaagatctggaaaatttaatgcaactgtatcaatat 54  Q
    |||||||| ||| ||| |||||||||||||||||  |||||||||||||    
T  12067986 aataaggaagacacaatatctggaaaatttaatgtgactgtatcaatat 12068034  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 338 - 411
Target Start/End: Complemental strand, 2660397 - 2660323
Alignment:
Q  338 gcattcaaactcaaagattaggtttaga-tttcttttagccaaaaagacagcaatggcggctgaactgcttcttg 411  Q
    |||||||||||||||||||||||||||| ||| |||||||||||| |||| ||   |||||||||| ||||||||    
T  2660397 gcattcaaactcaaagattaggtttagattttgttttagccaaaatgacatcagcagcggctgaacagcttcttg 2660323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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