View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20549_high_1 (Length: 401)
Name: NF20549_high_1
Description: NF20549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20549_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 1 - 389
Target Start/End: Complemental strand, 18460340 - 18459952
Alignment:
| Q |
1 |
tgattttcatttccactcattaaagggtaaccatttttgtcatgattatgtctttcaacttcaacctctatgttagactctctattagacttcatttcca |
100 |
Q |
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| T |
18460340 |
tgattttcatttccactcattaaagggtaaccatttttgtcttgattatgtctttcaacttcaacctctatgttagactctctattagacttcatttcca |
18460241 |
T |
|
| Q |
101 |
tgtccattgaaaggaaactaccttgatgggagttttttggactcctttgtacatcagatgatcctgcaagatggaaaccagaattggattgaaaggaccc |
200 |
Q |
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| T |
18460240 |
tgtccattgaaaggaaactaccttgatgggagttttttggactcctttgtacatcagatgatcctgcaagatggaaaccagaattggattgaaaggaccc |
18460141 |
T |
|
| Q |
201 |
tccttctcctcccattgttgatgttgacattgaattattggaacttgaaattactgttggagaagggttttggttgttgaagttttctgcctttgaatga |
300 |
Q |
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| T |
18460140 |
tccttctcctcccattgttgatgttgacattgaattattggaacttgaaattactgttggagaagggttttggttgttgaagttttctgcctttgaatga |
18460041 |
T |
|
| Q |
301 |
agattattaatttgatcaagttttgtgacacctaattcttttgatttatttgtgttatccttggagtcattattctcctcttgctcctt |
389 |
Q |
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| T |
18460040 |
agattattaatttgatcaagttttgtgacacctaattcttttgatttatttgtgttatccttggagtcattattctcctcttgctcctt |
18459952 |
T |
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