View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20549_high_3 (Length: 324)
Name: NF20549_high_3
Description: NF20549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20549_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 315
Target Start/End: Original strand, 28014335 - 28014649
Alignment:
| Q |
1 |
gtcagttctaagttgttgctctttatgtctcgtaactaaagttattgattcatctgccaatacatgtccgtgtataaaattgcttgcattcgcattttta |
100 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28014335 |
gtcagttctaagttgttgctctttatgtcttgtaactaaagttattgattcatctgccaatacatgtccgtgtataaaattgcttgcattcgcatttttt |
28014434 |
T |
|
| Q |
101 |
aaattacatttgaatgtgcaagaaaataacatgaagaaagaacgtaaagttgttgacttattgtttcacaactggaggatttaatttcaaaattacacat |
200 |
Q |
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|||||||||||||||||||||||||||||||| |||||||| ||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
28014435 |
aaattacatttgaatgtgcaagaaaataacatcaagaaagaccgtaaagctgttgacttattgtttcacaactgaaggatttaatttcaaaattacacat |
28014534 |
T |
|
| Q |
201 |
actaaccaatattcatttgcattttaactaaaagtttgcaaaccccgattcaaaagaatctcactctcatctaaggattcactcaccnnnnnnnccttct |
300 |
Q |
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|
||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
28014535 |
actaaccaatattcatttgcattttaactgaaagtttgcacaccccgattcaaaagaatctcactctcatctaaggattcactcacctttttttccttct |
28014634 |
T |
|
| Q |
301 |
aatttcctagtataa |
315 |
Q |
| |
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||||||||||||||| |
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| T |
28014635 |
aatttcctagtataa |
28014649 |
T |
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