View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20549_low_3 (Length: 327)
Name: NF20549_low_3
Description: NF20549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20549_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 1 - 310
Target Start/End: Complemental strand, 28014224 - 28013915
Alignment:
| Q |
1 |
caggagaaatttttcaatgcaaaacagcttgattaggtgtgacagtctggttaataaccagtctccggatatcgtagaattttttcctgccacaccagat |
100 |
Q |
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| T |
28014224 |
caggagaaatttttcaatgcaaaacagcttgattaggtgtgacagtctggttaataaccagtctccggatatcgtggaattttttcctgccacaccagat |
28014125 |
T |
|
| Q |
101 |
cgagtaattgtctaagataaatgatactgataacatcaaggagagcaaacatttatatttttggaactaaaatatggactaatattatcagcggtgacaa |
200 |
Q |
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| T |
28014124 |
cgagtaattgtctaagataaatgataccgataacatcaaggagagcaaacatttatatttttggaactaaaatatggactaatattatcagcggttacaa |
28014025 |
T |
|
| Q |
201 |
ttgcagacatatacatgcatgaagaatacaatacaagcacgaaatgtaccagagatgagaattaccatagaagaggagagtttttccaactagttggcct |
300 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
28014024 |
ttgcagacatatacatgcattaagaatacaatacaagcacgaaatgtaccagagatgagaattaccatagaagaggagagtttttccaattagttggcct |
28013925 |
T |
|
| Q |
301 |
aagatcctga |
310 |
Q |
| |
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|||||||||| |
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| T |
28013924 |
aagatcctga |
28013915 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 256 - 290
Target Start/End: Original strand, 54960855 - 54960889
Alignment:
| Q |
256 |
tgagaattaccatagaagaggagagtttttccaac |
290 |
Q |
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| T |
54960855 |
tgagaattaccatagaagaggagagtttttccaac |
54960889 |
T |
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