View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20549_low_5 (Length: 226)
Name: NF20549_low_5
Description: NF20549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20549_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 161; Significance: 5e-86; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 37 - 209
Target Start/End: Original strand, 40395437 - 40395609
Alignment:
| Q |
37 |
ttttaggcctaaagtaaatatttagaccaaattacctaagatggccatgcatatatgacacccccaatggtttataacacagggcaagctatttcaggac |
136 |
Q |
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| T |
40395437 |
ttttaggcctaaagtaaatatttagtccaaattacctaagatggccctgcatatatgacacccccaatggtttataacacagggcaagctatctcaggac |
40395536 |
T |
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| Q |
137 |
tgaggacccccctgtggaagagtggacttacgttgagttgagggtaaaccgctttaattgggagtattatttt |
209 |
Q |
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| T |
40395537 |
tgaggacccccctgtggaagagtggacttacgttgagttgagggtaaaccgctttaattgggagtattatttt |
40395609 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 37 - 209
Target Start/End: Original strand, 40385980 - 40386143
Alignment:
| Q |
37 |
ttttaggcctaaagtaaatatttagaccaaattacctaagatggccatgcatatatgacacccccaatggtttataacacagggcaagctatttcaggac |
136 |
Q |
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||||||| ||||||||||||||||||||| ||||||| ||||||| ||||||||||| | | ||||||||||||||||||||||||||||| | |||| |
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| T |
40385980 |
ttttaggtctaaagtaaatatttagaccacattacctgggatggccctgcatatatgaaatctccaatggtttataacacagggcaagctatgtgagga- |
40386078 |
T |
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| Q |
137 |
tgaggacccccctgtggaagagtggacttacgttgagttgagggtaaaccgctttaattgggagtattatttt |
209 |
Q |
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| T |
40386079 |
--------cccctgtggaagattggacttacgttgagttgagggcaaaccgctttaactcggagtattatttt |
40386143 |
T |
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