View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20549_low_6 (Length: 218)
Name: NF20549_low_6
Description: NF20549
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20549_low_6 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 18460560 - 18460362
Alignment:
| Q |
1 |
aaactcattctcattgcttcccatttcatcaatggtccctcctaaatgtaaattctgagagagaaatccatgttgggttgaagagagagggatattttca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18460560 |
aaactcattctcattgcttcccatttcatcaatcgtccctcctaaatgtaaattctgagagagaaatccatgttgggttgaagagagagggatattttca |
18460461 |
T |
|
| Q |
101 |
ttatgaggtagtccaagagttagagaaacaccatttccatggaacctaggagctaattgctcactaacattaaaccttctaatatcttccattgagaat |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18460460 |
ttatgaggtagtccaagagttagagaaacaccatttccatggaacctaggagctaattgctcactaacattaaaccttctaatatcttccattgagaat |
18460362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University