View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2054_high_3 (Length: 376)

Name: NF2054_high_3
Description: NF2054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2054_high_3
NF2054_high_3
[»] chr7 (4 HSPs)
chr7 (1-157)||(48174841-48174997)
chr7 (245-363)||(48174623-48174739)
chr7 (4-38)||(8766879-8766913)
chr7 (1-37)||(38032920-38032956)
[»] chr3 (9 HSPs)
chr3 (1-40)||(6284868-6284907)
chr3 (1-40)||(24160593-24160632)
chr3 (4-39)||(24130551-24130586)
chr3 (1-31)||(31108825-31108855)
chr3 (1-38)||(16874255-16874292)
chr3 (1-38)||(40160728-40160765)
chr3 (5-41)||(9624972-9625008)
chr3 (2-42)||(47497076-47497116)
chr3 (5-37)||(52030114-52030146)
[»] chr1 (8 HSPs)
chr1 (1-40)||(18179319-18179358)
chr1 (3-39)||(43327002-43327038)
chr1 (120-154)||(50995085-50995119)
chr1 (1-38)||(9768874-9768911)
chr1 (1-38)||(18003809-18003846)
chr1 (4-32)||(1580828-1580856)
chr1 (1-37)||(9931081-9931117)
chr1 (5-45)||(39238701-39238741)
[»] chr8 (6 HSPs)
chr8 (1-32)||(7345427-7345458)
chr8 (5-39)||(38790643-38790677)
chr8 (1-39)||(39432393-39432431)
chr8 (5-38)||(2696525-2696558)
chr8 (1-38)||(5598035-5598072)
chr8 (1-38)||(5637203-5637240)
[»] chr6 (4 HSPs)
chr6 (1-32)||(9422832-9422863)
chr6 (1-39)||(22730767-22730805)
chr6 (4-37)||(3029960-3029993)
chr6 (1-38)||(34524868-34524905)
[»] chr2 (4 HSPs)
chr2 (1-32)||(39334946-39334977)
chr2 (4-41)||(1244559-1244596)
chr2 (9-45)||(32677321-32677357)
chr2 (4-40)||(39118384-39118420)
[»] scaffold0168 (1 HSPs)
scaffold0168 (1-39)||(34098-34136)
[»] chr4 (5 HSPs)
chr4 (1-31)||(56925-56955)
chr4 (1-38)||(41492563-41492600)
chr4 (1-38)||(49039510-49039547)
chr4 (1-38)||(54854244-54854281)
chr4 (1-37)||(49319387-49319423)


Alignment Details
Target: chr7 (Bit Score: 129; Significance: 1e-66; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 48174997 - 48174841
Alignment:
Q  1 tgcatgtccctgccaactgagttatgctcacgaggacaataaaaagggttgtttttattttctaacatcgattttctgagtcatatgacgtgtttttatt 100  Q
    ||||||||| ||||||||||| ||| |||||| |||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  48174997 tgcatgtccttgccaactgagctatactcacggggacaataaaaaaggttgtttttactttctaacatcgattttctgagtcatatgacgtgtttttatt 48174898  T
Q  101 tggtcacgcacgacaagtcatagactaaaaacaacaattttttaatttacatgatct 157  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  48174897 tggtcacgcacgacaagtcatagattaaaaacaacaattttttaatttacatgatct 48174841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 245 - 363
Target Start/End: Complemental strand, 48174739 - 48174623
Alignment:
Q  245 gacaaatcttccaactaccacagtaccgtaccacgtacacgttgtctccatttcatcttcaat---ggctgattgcatgtacttgtaataagttgtctcg 341  Q
    |||||||||||||||||||||||||||     |||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||     
T  48174739 gacaaatcttccaactaccacagtacc-----acgtacacgttgtctccatttcatcttcaatattggctgattgcatgtacttgtaataagttgtctca 48174645  T
Q  342 aactaaacaccacaagattgat 363  Q
    || |||||||||||||||||||    
T  48174644 aaataaacaccacaagattgat 48174623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 38
Target Start/End: Original strand, 8766879 - 8766913
Alignment:
Q  4 atgtccctgccaactgagttatgctcacgaggaca 38  Q
    ||||||||||||||||||||||||||||| |||||    
T  8766879 atgtccctgccaactgagttatgctcacggggaca 8766913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 38032920 - 38032956
Alignment:
Q  1 tgcatgtccctgccaactgagttatgctcacgaggac 37  Q
    |||||||||||||||||||||||||| ||||| ||||    
T  38032920 tgcatgtccctgccaactgagttatgttcacggggac 38032956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 6284907 - 6284868
Alignment:
Q  1 tgcatgtccctgccaactgagttatgctcacgaggacaat 40  Q
    |||||||||||||||||||| |||||||||||||||||||    
T  6284907 tgcatgtccctgccaactgaattatgctcacgaggacaat 6284868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 24160593 - 24160632
Alignment:
Q  1 tgcatgtccctgccaactgagttatgctcacgaggacaat 40  Q
    |||||||| |||||||||||||||||||||||||||||||    
T  24160593 tgcatgtctctgccaactgagttatgctcacgaggacaat 24160632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 4 - 39
Target Start/End: Complemental strand, 24130586 - 24130551
Alignment:
Q  4 atgtccctgccaactgagttatgctcacgaggacaa 39  Q
    ||||||||||||||||||||||||||||| ||||||    
T  24130586 atgtccctgccaactgagttatgctcacggggacaa 24130551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 31108825 - 31108855
Alignment:
Q  1 tgcatgtccctgccaactgagttatgctcac 31  Q
    |||||||||||||||||||||||||||||||    
T  31108825 tgcatgtccctgccaactgagttatgctcac 31108855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 16874255 - 16874292
Alignment:
Q  1 tgcatgtccctgccaactgagttatgctcacgaggaca 38  Q
    ||||||||||||||||||||| |||||||||| |||||    
T  16874255 tgcatgtccctgccaactgagctatgctcacggggaca 16874292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 40160765 - 40160728
Alignment:
Q  1 tgcatgtccctgccaactgagttatgctcacgaggaca 38  Q
    |||||||||||||||| |||| ||||||||||||||||    
T  40160765 tgcatgtccctgccaattgagctatgctcacgaggaca 40160728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 41
Target Start/End: Complemental strand, 9625008 - 9624972
Alignment:
Q  5 tgtccctgccaactgagttatgctcacgaggacaata 41  Q
    ||||||||||||||||| |||||||||| ||||||||    
T  9625008 tgtccctgccaactgagctatgctcacggggacaata 9624972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 47497116 - 47497076
Alignment:
Q  2 gcatgtccctgccaactgagttatgctcacgaggacaataa 42  Q
    |||||||||||||||||||||||| |||| | |||||||||    
T  47497116 gcatgtccctgccaactgagttatactcaaggggacaataa 47497076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 37
Target Start/End: Complemental strand, 52030146 - 52030114
Alignment:
Q  5 tgtccctgccaactgagttatgctcacgaggac 37  Q
    |||||||||||||||||||||||||||| ||||    
T  52030146 tgtccctgccaactgagttatgctcacggggac 52030114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 18179358 - 18179319
Alignment:
Q  1 tgcatgtccctgccaactgagttatgctcacgaggacaat 40  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  18179358 tgcatgtccctgccaactgagttatgctcacggggacaat 18179319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 39
Target Start/End: Complemental strand, 43327038 - 43327002
Alignment:
Q  3 catgtccctgccaactgagttatgctcacgaggacaa 39  Q
    ||||||||||| |||||||||||||||||||||||||    
T  43327038 catgtccctgcaaactgagttatgctcacgaggacaa 43327002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 120 - 154
Target Start/End: Original strand, 50995085 - 50995119
Alignment:
Q  120 atagactaaaaacaacaattttttaatttacatga 154  Q
    ||||||||||| |||||||||||||||||||||||    
T  50995085 atagactaaaagcaacaattttttaatttacatga 50995119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 9768874 - 9768911
Alignment:
Q  1 tgcatgtccctgccaactgagttatgctcacgaggaca 38  Q
    ||||||||||||||||||||| |||||||||| |||||    
T  9768874 tgcatgtccctgccaactgagctatgctcacggggaca 9768911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 18003846 - 18003809
Alignment:
Q  1 tgcatgtccctgccaactgagttatgctcacgaggaca 38  Q
    ||||||||||||||||||||| |||||||||| |||||    
T  18003846 tgcatgtccctgccaactgagctatgctcacggggaca 18003809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 32
Target Start/End: Complemental strand, 1580856 - 1580828
Alignment:
Q  4 atgtccctgccaactgagttatgctcacg 32  Q
    |||||||||||||||||||||||||||||    
T  1580856 atgtccctgccaactgagttatgctcacg 1580828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 9931117 - 9931081
Alignment:
Q  1 tgcatgtccctgccaactgagttatgctcacgaggac 37  Q
    ||||||||||||| |||||||||||||||||| ||||    
T  9931117 tgcatgtccctgctaactgagttatgctcacggggac 9931081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 5 - 45
Target Start/End: Complemental strand, 39238741 - 39238701
Alignment:
Q  5 tgtccctgccaactgagttatgctcacgaggacaataaaaa 45  Q
    ||||||||||||||||| |||||||||| |||||| |||||    
T  39238741 tgtccctgccaactgagctatgctcacggggacaaaaaaaa 39238701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 7345458 - 7345427
Alignment:
Q  1 tgcatgtccctgccaactgagttatgctcacg 32  Q
    ||||||||||||||||||||||||||||||||    
T  7345458 tgcatgtccctgccaactgagttatgctcacg 7345427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 39
Target Start/End: Original strand, 38790643 - 38790677
Alignment:
Q  5 tgtccctgccaactgagttatgctcacgaggacaa 39  Q
    |||||||||||||||||||||||||||| ||||||    
T  38790643 tgtccctgccaactgagttatgctcacggggacaa 38790677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 39432393 - 39432431
Alignment:
Q  1 tgcatgtccctgccaactgagttatgctcacgaggacaa 39  Q
    ||||||||||||||||||||| |||||||||| ||||||    
T  39432393 tgcatgtccctgccaactgagctatgctcacggggacaa 39432431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 38
Target Start/End: Complemental strand, 2696558 - 2696525
Alignment:
Q  5 tgtccctgccaactgagttatgctcacgaggaca 38  Q
    |||||||||||||||||||||||||||| |||||    
T  2696558 tgtccctgccaactgagttatgctcacggggaca 2696525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 5598072 - 5598035
Alignment:
Q  1 tgcatgtccctgccaactgagttatgctcacgaggaca 38  Q
    ||||||||| |||||||||||||||| |||||||||||    
T  5598072 tgcatgtccttgccaactgagttatggtcacgaggaca 5598035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 5637203 - 5637240
Alignment:
Q  1 tgcatgtccctgccaactgagttatgctcacgaggaca 38  Q
    ||||||||| |||||||||||||||| |||||||||||    
T  5637203 tgcatgtccttgccaactgagttatggtcacgaggaca 5637240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 9422863 - 9422832
Alignment:
Q  1 tgcatgtccctgccaactgagttatgctcacg 32  Q
    ||||||||||||||||||||||||||||||||    
T  9422863 tgcatgtccctgccaactgagttatgctcacg 9422832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 22730767 - 22730805
Alignment:
Q  1 tgcatgtccctgccaactgagttatgctcacgaggacaa 39  Q
    |||||||| ||||||||||||||||||||||| ||||||    
T  22730767 tgcatgtctctgccaactgagttatgctcacggggacaa 22730805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 37
Target Start/End: Complemental strand, 3029993 - 3029960
Alignment:
Q  4 atgtccctgccaactgagttatgctcacgaggac 37  Q
    ||||||||||||||| ||||||||||||||||||    
T  3029993 atgtccctgccaactaagttatgctcacgaggac 3029960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 34524905 - 34524868
Alignment:
Q  1 tgcatgtccctgccaactgagttatgctcacgaggaca 38  Q
    ||||||||||||||||||||| |||||||||| |||||    
T  34524905 tgcatgtccctgccaactgagctatgctcacggggaca 34524868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 39334946 - 39334977
Alignment:
Q  1 tgcatgtccctgccaactgagttatgctcacg 32  Q
    ||||||||||||||||||||||||||||||||    
T  39334946 tgcatgtccctgccaactgagttatgctcacg 39334977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 41
Target Start/End: Complemental strand, 1244596 - 1244559
Alignment:
Q  4 atgtccctgccaactgagttatgctcacgaggacaata 41  Q
    |||||||||||||||||  |||||||||||||||||||    
T  1244596 atgtccctgccaactgaactatgctcacgaggacaata 1244559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 9 - 45
Target Start/End: Complemental strand, 32677357 - 32677321
Alignment:
Q  9 cctgccaactgagttatgctcacgaggacaataaaaa 45  Q
    |||| ||||||||||||||||||| ||||||||||||    
T  32677357 cctgtcaactgagttatgctcacggggacaataaaaa 32677321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 40
Target Start/End: Complemental strand, 39118420 - 39118384
Alignment:
Q  4 atgtccctgccaactgagttatgctcacgaggacaat 40  Q
    |||||||| |||||||||||| |||||||||||||||    
T  39118420 atgtccctaccaactgagttacgctcacgaggacaat 39118384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 34098 - 34136
Alignment:
Q  1 tgcatgtccctgccaactgagttatgctcacgaggacaa 39  Q
    ||||||||||||||||||||| |||||||||| ||||||    
T  34098 tgcatgtccctgccaactgagctatgctcacggggacaa 34136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 56925 - 56955
Alignment:
Q  1 tgcatgtccctgccaactgagttatgctcac 31  Q
    |||||||||||||||||||||||||||||||    
T  56925 tgcatgtccctgccaactgagttatgctcac 56955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 41492563 - 41492600
Alignment:
Q  1 tgcatgtccctgccaactgagttatgctcacgaggaca 38  Q
    ||||||||||||||||||||| |||||||||| |||||    
T  41492563 tgcatgtccctgccaactgagctatgctcacggggaca 41492600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 49039510 - 49039547
Alignment:
Q  1 tgcatgtccctgccaactgagttatgctcacgaggaca 38  Q
    ||||||||||||||||||||| |||||||||| |||||    
T  49039510 tgcatgtccctgccaactgagctatgctcacggggaca 49039547  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 54854244 - 54854281
Alignment:
Q  1 tgcatgtccctgccaactgagttatgctcacgaggaca 38  Q
    ||||||||||||||||||||| |||||||||| |||||    
T  54854244 tgcatgtccctgccaactgagctatgctcacggggaca 54854281  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 49319423 - 49319387
Alignment:
Q  1 tgcatgtccctgccaactgagttatgctcacgaggac 37  Q
    ||||||||| ||||||||||| |||||||||||||||    
T  49319423 tgcatgtccatgccaactgagctatgctcacgaggac 49319387  T

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