View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2054_low_1 (Length: 745)

Name: NF2054_low_1
Description: NF2054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2054_low_1
NF2054_low_1
[»] chr2 (6 HSPs)
chr2 (20-404)||(30860499-30860915)
chr2 (512-733)||(30860117-30860337)
chr2 (324-404)||(30861599-30861680)
chr2 (581-686)||(25951016-25951123)
chr2 (56-250)||(30861343-30861536)
chr2 (636-733)||(8143505-8143603)
[»] chr1 (4 HSPs)
chr1 (586-729)||(13342720-13342865)
chr1 (581-686)||(17177198-17177305)
chr1 (581-660)||(43861647-43861727)
chr1 (581-698)||(42541360-42541479)
[»] chr3 (9 HSPs)
chr3 (638-733)||(50430076-50430172)
chr3 (633-733)||(49308933-49309034)
chr3 (581-674)||(31237742-31237836)
chr3 (597-686)||(37236184-37236275)
chr3 (547-686)||(1850895-1851035)
chr3 (638-730)||(12870744-12870835)
chr3 (633-672)||(52739942-52739981)
chr3 (638-707)||(6232631-6232701)
chr3 (638-686)||(19747400-19747449)
[»] chr6 (4 HSPs)
chr6 (581-686)||(7704186-7704293)
chr6 (581-686)||(6046572-6046679)
chr6 (581-686)||(12113328-12113435)
chr6 (674-720)||(35081572-35081618)
[»] chr4 (7 HSPs)
chr4 (581-686)||(3887762-3887869)
chr4 (581-681)||(32414660-32414762)
chr4 (638-733)||(5577179-5577275)
chr4 (581-660)||(12582756-12582836)
chr4 (602-660)||(47981749-47981808)
chr4 (625-733)||(28662391-28662501)
chr4 (633-686)||(32416589-32416643)
[»] chr8 (5 HSPs)
chr8 (636-733)||(3793920-3794018)
chr8 (583-648)||(5016856-5016922)
chr8 (602-686)||(38966046-38966132)
chr8 (617-686)||(15556954-15557025)
chr8 (596-660)||(21662276-21662341)
[»] chr5 (3 HSPs)
chr5 (625-733)||(7320625-7320735)
chr5 (602-686)||(24315807-24315893)
chr5 (602-686)||(24358140-24358226)
[»] chr7 (7 HSPs)
chr7 (583-686)||(21979892-21979997)
chr7 (638-733)||(37741423-37741519)
chr7 (602-686)||(13956475-13956561)
chr7 (638-733)||(35846416-35846512)
chr7 (617-731)||(36497876-36497992)
chr7 (674-733)||(41274534-41274593)
chr7 (625-670)||(33509948-33509994)
[»] scaffold0025 (1 HSPs)
scaffold0025 (638-733)||(47042-47138)


Alignment Details
Target: chr2 (Bit Score: 274; Significance: 1e-153; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 20 - 404
Target Start/End: Complemental strand, 30860915 - 30860499
Alignment:
Q  20 cctgattcatacaaaaagaaggaaccgtttgaagcaga-------------cgttatatttttcatggctaattcgagattggctaagaaaaccttagga 106  Q
    |||||| |||||||||||||||||||||||||||||||             |||||||||||||||||||||||||||||||||||||||||| ||||||    
T  30860915 cctgatgcatacaaaaagaaggaaccgtttgaagcagaaaaccatgaatgacgttatatttttcatggctaattcgagattggctaagaaaacgttagga 30860816  T
Q  107 agaggaacacttgaaatggagtttgatgacccttagttttgatgataattgggttatgagtgaaaatgtagaagatattggcactgaaattttggatgag 206  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||    
T  30860815 agaggaacacttgaaatggagtttgatgacccttggttttgatgataattggattatgagtgaaaatgtagaagatattggcactgaaattttggacgag 30860716  T
Q  207 gactttgctgaagttaatcaatatcaaattgaggaggatgaggatgccattcttgttcataattgagaagatgaacattacgg----------------- 289  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||                     
T  30860715 gactttgctgaagtgaatcaatatcaaattgaggaggatgaggatgccattcttgttcataattgagaagataaacattacggaggtagagatgaatgtg 30860616  T
Q  290 -aggcagagatgaattggaagatgaagaagataataaaatggagg-aatgatgatcccttgagtaattatgacctactccaacatgaagtgtttgggaat 387  Q
     |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  30860615 taggcagagatgaattggaagatgaagaagataataaaatggaggaaatgatgatcccctgagtaattatgacctactccaacatgaagtgtttgggaat 30860516  T
Q  388 tgagagaattataatta 404  Q
    |||||||||||||||||    
T  30860515 tgagagaattataatta 30860499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 512 - 733
Target Start/End: Complemental strand, 30860337 - 30860117
Alignment:
Q  512 aatattatgatcccaaatttcagtttttgttaagtaatttaagtgttatttggaattattgttctagtcaattatgttgattcatatgcatatgtatgaa 611  Q
    ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30860337 aatattatgatcctaaatttcagtttttgtttagtaatttaagtgttatttggaattattgttctagtcaattatgttgattcatatgcatatgtatgaa 30860238  T
Q  612 tagacatgcaatatatataaattttaaatttgataggatcttacgatccatgttacgatcccc-gattcacaatctagtgacccctccccgatcttgccc 710  Q
    |||| ||||||||  |||||| |||||||||| |||||||||| ||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  30860237 tagatatgcaata--tataaagtttaaatttggtaggatcttatgatccgtgttacgatcccctgattcacaatctagtgacccctccccgatcttgccc 30860140  T
Q  711 aggatctcgactctgactacctt 733  Q
    |||||||||||||||||||||||    
T  30860139 aggatctcgactctgactacctt 30860117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 324 - 404
Target Start/End: Original strand, 30861599 - 30861680
Alignment:
Q  324 aaaatggaggaa-tgatgatcccttgagtaattatgacctactccaacatgaagtgtttgggaattgagagaattataatta 404  Q
    |||||||||||| |||||||||||| ||| |||||||||| |||||||||||| ||||||||||||||||||||||| ||||    
T  30861599 aaaatggaggaaatgatgatcccttaagtgattatgaccttctccaacatgaattgtttgggaattgagagaattatgatta 30861680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 581 - 686
Target Start/End: Complemental strand, 25951123 - 25951016
Alignment:
Q  581 aattatgttgattcatatgcatatgtatgaatagacatgcaatatatataaatttt-aaatttgataggatcttacgatccatgttacgat-ccccgatt 678  Q
    |||| ||||| |||||||||||||||||||||  | ||| ||||||||| |||||| ||||||| ||||||||||||||| |||||||||| ||||||||    
T  25951123 aattgtgttgcttcatatgcatatgtatgaatttatatggaatatatatgaatttttaaatttggtaggatcttacgatctatgttacgatcccccgatt 25951024  T
Q  679 cacaatct 686  Q
    ||| ||||    
T  25951023 cacgatct 25951016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 56 - 250
Target Start/End: Original strand, 30861343 - 30861536
Alignment:
Q  56 gacgttatatttttcatggctaattcgagattggctaagaaaaccttaggaagaggaacacttgaaatggagtttgatgacccttagttttgatgataat 155  Q
    |||||| ||||| |||  |||||||| |||||||| |||||||    ||| ||| |||||| ||||||| ||||||||| || || |||  |||||| ||    
T  30861343 gacgttgtatttgtcaccgctaattcaagattggccaagaaaaagaaagggagaagaacacctgaaatgaagtttgatggcc-ttggttccgatgatgat 30861441  T
Q  156 tgggttatgagtgaaaatgtagaagatattggcactgaaattttggatgaggactttgctgaagttaatcaatatcaaattgaggaggatgagga 250  Q
    |||||||||| ||||| || |||||||  ||||||| ||||||||||||  ||||| |   |||| |||||| || ||||||| |||||||||||    
T  30861442 tgggttatgaatgaaagtgcagaagatggtggcactaaaattttggatggagacttcgtataagtgaatcaacattaaattgaagaggatgagga 30861536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 636 - 733
Target Start/End: Original strand, 8143505 - 8143603
Alignment:
Q  636 taaatttgataggatcttacgatccatgttacgatcc-ccgattcacaatctagtgacccctccccgatcttgcccaggatctcgactctgactacctt 733  Q
    |||||||| ||||||||||| |||||||||| |||||   |||| || |||| ||||||| ||||||||||| |  |||||| ||| ||||||||||||    
T  8143505 taaatttggtaggatcttacaatccatgttatgatcctatgatttacgatcttgtgacccttccccgatcttacataggatcccgattctgactacctt 8143603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 70; Significance: 4e-31; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 586 - 729
Target Start/End: Original strand, 13342720 - 13342865
Alignment:
Q  586 tgttgattcatatgcatatgtatgaatagacatgcaatatatataaattt-taaatttgataggatcttacgatccatgttacgatc-cccgattcacaa 683  Q
    ||||| ||||||||||||||||||||| || ||||||| ||||  ||||| |||||||| |||||||||||||||| |||||| ||| ||| |||||| |    
T  13342720 tgttgcttcatatgcatatgtatgaatcgatatgcaatgtataggaatttataaatttggtaggatcttacgatccgtgttacaatctcccaattcacga 13342819  T
Q  684 tctagtgacccctccccgatcttgcccaggatctcgactctgacta 729  Q
    ||||||||||||||||||||||| || | |||||||| ||||||||    
T  13342820 tctagtgacccctccccgatcttacctatgatctcgagtctgacta 13342865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 581 - 686
Target Start/End: Original strand, 17177198 - 17177305
Alignment:
Q  581 aattatgttgattcatatgcatatgtatgaatagacatgcaatatatataaatttt-aaatttgataggatcttacgatccatgttacgat-ccccgatt 678  Q
    |||| ||||| |||||||||||||||||||||  | ||  ||||||||| |||||| |||||||||||||||||||||||| ||||||||| ||||||||    
T  17177198 aattgtgttgcttcatatgcatatgtatgaatttatattgaatatatatgaatttttaaatttgataggatcttacgatccgtgttacgatcccccgatt 17177297  T
Q  679 cacaatct 686  Q
    ||| ||||    
T  17177298 cacgatct 17177305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 581 - 660
Target Start/End: Original strand, 43861647 - 43861727
Alignment:
Q  581 aattatgttgattcatatgcatatgtatgaatagacatgcaatatatat-aaattttaaatttgataggatcttacgatcc 660  Q
    |||| ||||| |||||||||||||||||||||  | ||| ||||||||| || ||||||||||| ||||||||||||||||    
T  43861647 aattgtgttgcttcatatgcatatgtatgaatttatatggaatatatatgaatttttaaatttggtaggatcttacgatcc 43861727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 581 - 698
Target Start/End: Complemental strand, 42541479 - 42541360
Alignment:
Q  581 aattatgttgattcatatgcatatgtatgaatagacatgcaatatatataaattt-taaatttgataggatcttacgatccatgttacgat-ccccgatt 678  Q
    |||||||| | || ||||||||||||||||||  | ||||||||  ||| ||||| | |||||| |||||||||| || || |||| |||| ||||||||    
T  42541479 aattatgtagttttatatgcatatgtatgaatctatatgcaatacgtatgaatttctgaatttggtaggatcttaagacccgtgttgcgatcccccgatt 42541380  T
Q  679 cacaatctagtgacccctcc 698  Q
    ||  |||| |||||||||||    
T  42541379 catgatcttgtgacccctcc 42541360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 5e-21; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 638 - 733
Target Start/End: Complemental strand, 50430172 - 50430076
Alignment:
Q  638 aatttgataggatcttacgatccatgttacgatccc-cgattcacaatctagtgacccctccccgatcttgcccaggatctcgactctgactacctt 733  Q
    |||||| |||||||||||||||| |||||||||||| |||||||| |||| |||||||||| ||||||||||| | |||||||| | ||||||||||    
T  50430172 aatttggtaggatcttacgatccgtgttacgatccctcgattcacgatcttgtgacccctctccgatcttgcctaagatctcgattttgactacctt 50430076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 633 - 733
Target Start/End: Original strand, 49308933 - 49309034
Alignment:
Q  633 ttttaaatttgataggatcttacgatccatgttacgatcccc-gattcacaatctagtgacccctccccgatcttgcccaggatctcgactctgactacc 731  Q
    |||| |||||| |||||| || |||||| |||||| |||||| ||||||| |||| |||||||||| ||||||||||| | |||||||||||||||||||    
T  49308933 ttttgaatttggtaggatattccgatccttgttacaatcccccgattcacgatcttgtgacccctctccgatcttgcctacgatctcgactctgactacc 49309032  T
Q  732 tt 733  Q
    ||    
T  49309033 tt 49309034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 581 - 674
Target Start/End: Original strand, 31237742 - 31237836
Alignment:
Q  581 aattatgttgattcatatgcatatgtatgaatagacatgcaatatatataaatttt-aaatttgataggatcttacgatccatgttacgatcccc 674  Q
    |||| ||||| |||||||||||||||||||||  | ||| ||||||||| |||||| ||||||| |||||||||||||||| ||||| |||||||    
T  31237742 aattgtgttgcttcatatgcatatgtatgaatttatatggaatatatatgaatttttaaatttggtaggatcttacgatccgtgttatgatcccc 31237836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 597 - 686
Target Start/End: Complemental strand, 37236275 - 37236184
Alignment:
Q  597 atgcatatgtatgaatagacatgcaatatatataaatttt-aaatttgataggatcttacgatccatgttacgat-ccccgattcacaatct 686  Q
    ||||||||||||||||  | ||| ||||||||| |||||| ||||||| |||||||||||||||| ||||||||| ||||||||||| ||||    
T  37236275 atgcatatgtatgaatttatatggaatatatatgaatttttaaatttggtaggatcttacgatccgtgttacgatcccccgattcacgatct 37236184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 547 - 686
Target Start/End: Original strand, 1850895 - 1851035
Alignment:
Q  547 aatttaagtgttatttggaattattgttctagtcaattatgttgattcatatgcatatgtatgaatagacatgcaatatatataaattt-taaatttgat 645  Q
    ||||| ||||||||||  | ||||| ||||| | ||||||||||  ||||||| ||||||||||||  | ||| ||||||||| ||||| |||||||| |    
T  1850895 aatttgagtgttatttaaagttatttttctattaaattatgttgcgtcatatgaatatgtatgaatttatatgtaatatatatgaatttctaaatttggt 1850994  T
Q  646 aggatcttacgatccatgttacgat-ccccgattcacaatct 686  Q
    |||||||||| |||| || |||||| ||||||||||| ||||    
T  1850995 aggatcttacaatccgtg-tacgatcccccgattcacgatct 1851035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 638 - 730
Target Start/End: Complemental strand, 12870835 - 12870744
Alignment:
Q  638 aatttgataggatcttacgatccatgttacgat-ccccgattcacaatctagtgacccctccccgatcttgcccaggatctcgactctgactac 730  Q
    |||||| |||||||||||||||| ||||||||| |||||||| || |||| ||||  |||| ||||||||||| | |||||||| | |||||||    
T  12870835 aatttggtaggatcttacgatccgtgttacgatcccccgatttacgatcttgtga--cctctccgatcttgcctaagatctcgattttgactac 12870744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 633 - 672
Target Start/End: Original strand, 52739942 - 52739981
Alignment:
Q  633 ttttaaatttgataggatcttacgatccatgttacgatcc 672  Q
    ||||||||||| |||||||||||||| |||||||||||||    
T  52739942 ttttaaatttggtaggatcttacgattcatgttacgatcc 52739981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 638 - 707
Target Start/End: Original strand, 6232631 - 6232701
Alignment:
Q  638 aatttgataggatcttacgatccatgttacgatc-cccgattcacaatctagtgacccctccccgatcttg 707  Q
    |||||| ||| |||||||||||| |||||||||| || ||||||| |||| |||| ||||| |||||||||    
T  6232631 aatttggtagaatcttacgatccgtgttacgatctcctgattcacgatcttgtgaaccctctccgatcttg 6232701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 638 - 686
Target Start/End: Complemental strand, 19747449 - 19747400
Alignment:
Q  638 aatttgataggatcttacgatccatgttacgat-ccccgattcacaatct 686  Q
    |||||| |||||||||||||||||||||| ||| ||||||||||| ||||    
T  19747449 aatttggtaggatcttacgatccatgttaggatcccccgattcacgatct 19747400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 2e-20; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 581 - 686
Target Start/End: Complemental strand, 7704293 - 7704186
Alignment:
Q  581 aattatgttgattcatatgcatatgtatgaatagacatgcaatatatataaa-ttttaaatttgataggatcttacgatccatgttacgatcc-ccgatt 678  Q
    |||||||||| |||||||| |||| |||||||  | ||||||||||||| || ||||||||||| |||||||||||||||| ||||||||||| ||||||    
T  7704293 aattatgttgcttcatatgaatatctatgaatttatatgcaatatatatgaacttttaaatttggtaggatcttacgatccgtgttacgatcctccgatt 7704194  T
Q  679 cacaatct 686  Q
    ||| ||||    
T  7704193 cacgatct 7704186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 581 - 686
Target Start/End: Original strand, 6046572 - 6046679
Alignment:
Q  581 aattatgttgattcatatgcatatgtatgaatagacatgcaatatatataaa-ttttaaatttgataggatcttacgatccatgttacga-tccccgatt 678  Q
    |||| ||||| |||||||||||||||||||||  | |||||||||||||||| ||||||||||| ||||||||||| |||| | |||||| ||||| |||    
T  6046572 aattgtgttgcttcatatgcatatgtatgaatttatatgcaatatatataaatttttaaatttggtaggatcttacaatccgtattacgattccccaatt 6046671  T
Q  679 cacaatct 686  Q
    ||| ||||    
T  6046672 cacgatct 6046679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 581 - 686
Target Start/End: Original strand, 12113328 - 12113435
Alignment:
Q  581 aattatgttgattcatatgcatatgtatgaatagacatgcaatatatataaattt-taaatttgataggatcttacgatccatgttacgat-ccccgatt 678  Q
    |||||||||| ||||| ||  |||||||||||  | ||||||||||||| ||||| |||||||| |||||||||||||||| ||||||||| ||||||||    
T  12113328 aattatgttgcttcatgtgagtatgtatgaatttatatgcaatatatatgaatttctaaatttggtaggatcttacgatccgtgttacgatcccccgatt 12113427  T
Q  679 cacaatct 686  Q
    ||| ||||    
T  12113428 cacgatct 12113435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 674 - 720
Target Start/End: Original strand, 35081572 - 35081618
Alignment:
Q  674 cgattcacaatctagtgacccctccccgatcttgcccaggatctcga 720  Q
    |||||||| |||| |||||||||| ||||||||||| ||||||||||    
T  35081572 cgattcacgatcttgtgacccctctccgatcttgcctaggatctcga 35081618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 2e-20; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 581 - 686
Target Start/End: Complemental strand, 3887869 - 3887762
Alignment:
Q  581 aattatgttgattcatatgcatatgtatgaatagacatgcaatatatataaattt-taaatttgataggatcttacgatccatgttacgat-ccccgatt 678  Q
    |||||||||| ||||||||  |||||||||||  | ||||||||||||| ||||| |||||||| |||||||||||||||| ||||||||| ||||||||    
T  3887869 aattatgttgcttcatatgagtatgtatgaatttatatgcaatatatatgaatttctaaatttggtaggatcttacgatccgtgttacgatcccccgatt 3887770  T
Q  679 cacaatct 686  Q
    ||| ||||    
T  3887769 cacgatct 3887762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 581 - 681
Target Start/End: Complemental strand, 32414762 - 32414660
Alignment:
Q  581 aattatgttgattcatatgcatatgtatgaatagacatgcaatatatataaatttt-aaatttgataggatcttacgatccatgttacgatcc-ccgatt 678  Q
    |||||||||| |||||||| |||| |||||||  | ||||||||||||| |||||| ||||||| |||||||||||||||| ||||||||||| ||||||    
T  32414762 aattatgttgcttcatatgaatatctatgaatttatatgcaatatatatgaatttttaaatttggtaggatcttacgatccgtgttacgatcctccgatt 32414663  T
Q  679 cac 681  Q
    |||    
T  32414662 cac 32414660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 638 - 733
Target Start/End: Complemental strand, 5577275 - 5577179
Alignment:
Q  638 aatttgataggatcttacgatccatgttacgatccc-cgattcacaatctagtgacccctccccgatcttgcccaggatctcgactctgactacctt 733  Q
    |||||| |||||||||||||||| |||||||||||  ||||| || |||| |||| ||||| ||||||||||| |||||||||| | ||||||||||    
T  5577275 aatttggtaggatcttacgatccgtgttacgatccatcgatttacgatcttgtgatccctctccgatcttgcctaggatctcgattttgactacctt 5577179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 581 - 660
Target Start/End: Original strand, 12582756 - 12582836
Alignment:
Q  581 aattatgttgattcatatgcatatgtatgaatagacatgcaatatatataaattt-taaatttgataggatcttacgatcc 660  Q
    |||||||||| |||||||| ||||||||||||  | ||||||| ||||  ||||| |||||||| ||||||||||||||||    
T  12582756 aattatgttgcttcatatgaatatgtatgaatttatatgcaatttatacgaatttctaaatttggtaggatcttacgatcc 12582836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 602 - 660
Target Start/End: Original strand, 47981749 - 47981808
Alignment:
Q  602 tatgtatgaatagacatgcaatatatataaatttt-aaatttgataggatcttacgatcc 660  Q
    |||||||||||  | ||||||||||||| |||||| ||||||| ||||||||||||||||    
T  47981749 tatgtatgaatttatatgcaatatatatgaatttttaaatttggtaggatcttacgatcc 47981808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 625 - 733
Target Start/End: Original strand, 28662391 - 28662501
Alignment:
Q  625 tatataaattt-taaatttgataggatcttacgatccatgttacgatccc-cgattcacaatctagtgacccctccccgatcttgcccaggatctcgact 722  Q
    ||||||||||| |||||||| ||||||||||| |||  |||| ||||||  ||||| |  |||| ||||||| ||||||||||| || ||||||  || |    
T  28662391 tatataaatttctaaatttggtaggatcttacaatctgtgttgcgatcctacgatttatgatcttgtgacccttccccgatcttacctaggatccagatt 28662490  T
Q  723 ctgactacctt 733  Q
    |||||||||||    
T  28662491 ctgactacctt 28662501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 633 - 686
Target Start/End: Original strand, 32416589 - 32416643
Alignment:
Q  633 ttttaaatttgataggatcttacgatccatgttacgatcc-ccgattcacaatct 686  Q
    ||||||||||| ||||||||||||| || ||||||||||| ||||||||| ||||    
T  32416589 ttttaaatttggtaggatcttacgaaccgtgttacgatcctccgattcacgatct 32416643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 8e-20; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 636 - 733
Target Start/End: Original strand, 3793920 - 3794018
Alignment:
Q  636 taaatttgataggatcttacgatccatgttacgatc-cccgattcacaatctagtgacccctccccgatcttgcccaggatctcgactctgactacctt 733  Q
    |||||||| |||||||||||||||| |||||||||| |||||||||| |||| ||||| ||||||||||||| || |||||||||| | || |||||||    
T  3793920 taaatttggtaggatcttacgatccgtgttacgatctcccgattcacgatcttgtgactcctccccgatcttacctaggatctcgagtttgtctacctt 3794018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 583 - 648
Target Start/End: Original strand, 5016856 - 5016922
Alignment:
Q  583 ttatgttgattcatatgcatatgtatgaatagacatgcaatatatataaattt-taaatttgatagg 648  Q
    |||||||| |||||||||||||||||||||| ||||||||||||| | ||||| |||||||||||||    
T  5016856 ttatgttgcttcatatgcatatgtatgaatatacatgcaatatatttgaatttctaaatttgatagg 5016922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 602 - 686
Target Start/End: Original strand, 38966046 - 38966132
Alignment:
Q  602 tatgtatgaatagacatgcaatatatataaattt-taaatttgataggatcttacgatccatgttacgat-ccccgattcacaatct 686  Q
    |||||||||||  | ||||||||||||| ||||| |||||||| |||||||||||||||| ||||||||| ||||||||||| ||||    
T  38966046 tatgtatgaattcatatgcaatatatatgaatttctaaatttggtaggatcttacgatccgtgttacgatcccccgattcacgatct 38966132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 617 - 686
Target Start/End: Original strand, 15556954 - 15557025
Alignment:
Q  617 atgcaatatatataaattt-taaatttgataggatcttacgatccatgttacgat-ccccgattcacaatct 686  Q
    ||||||||||||| ||||| |||||||| |||||||||||||||| ||||||||| ||||||||||| ||||    
T  15556954 atgcaatatatatgaatttctaaatttggtaggatcttacgatccgtgttacgatcccccgattcacgatct 15557025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 596 - 660
Target Start/End: Original strand, 21662276 - 21662341
Alignment:
Q  596 tatgcatatgtatgaatagacatgcaatatatataaatttt-aaatttgataggatcttacgatcc 660  Q
    |||| ||||||||||||  | ||| ||||||||| |||||| ||||||| ||||||||||||||||    
T  21662276 tatgaatatgtatgaatttatatggaatatatatgaatttttaaatttggtaggatcttacgatcc 21662341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 8e-20; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 625 - 733
Target Start/End: Original strand, 7320625 - 7320735
Alignment:
Q  625 tatataaattt-taaatttgataggatcttacgatccatgttacgatcccc-gattcacaatctagtgacccctccccgatcttgcccaggatctcgact 722  Q
    ||||||||||| |||||||| |||||||||||||||| |||||||||||   |||| ||||||| | ||||| ||||||||||| || |||||||||| |    
T  7320625 tatataaatttctaaatttggtaggatcttacgatccgtgttacgatcctatgatttacaatcttgcgacccttccccgatcttacctaggatctcgatt 7320724  T
Q  723 ctgactacctt 733  Q
    |||||||||||    
T  7320725 ctgactacctt 7320735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 602 - 686
Target Start/End: Complemental strand, 24315893 - 24315807
Alignment:
Q  602 tatgtatgaatagacatgcaatatatataaattt-taaatttgataggatcttacgatccatgttacgat-ccccgattcacaatct 686  Q
    |||||||||||  | ||||||||||||| ||||| |||||||| |||||||||||||||  ||||||||| ||||||||||| ||||    
T  24315893 tatgtatgaattcatatgcaatatatatgaatttctaaatttggtaggatcttacgatctgtgttacgatcccccgattcacgatct 24315807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 602 - 686
Target Start/End: Complemental strand, 24358226 - 24358140
Alignment:
Q  602 tatgtatgaatagacatgcaatatatataaattt-taaatttgataggatcttacgatccatgttacgat-ccccgattcacaatct 686  Q
    |||||||||||  | ||||||||||||| ||||| |||||||| |||||||||||||||  ||||||||| ||||||||||| ||||    
T  24358226 tatgtatgaattcatatgcaatatatatgaatttctaaatttggtaggatcttacgatctgtgttacgatcccccgattcacgatct 24358140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 8e-17; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 583 - 686
Target Start/End: Original strand, 21979892 - 21979997
Alignment:
Q  583 ttatgttgattcatatgcatatgtatgaatagacatgcaatatatataaattt-taaatttgataggatcttacgatccatgttacgat-ccccgattca 680  Q
    |||||||| ||||||||  |||||||||||  | ||||||||||||| ||||| |||||||| |||||||||||||||| | ||||||| ||||||||||    
T  21979892 ttatgttgcttcatatgagtatgtatgaatttatatgcaatatatatgaatttctaaatttggtaggatcttacgatccgtattacgatcccccgattca 21979991  T
Q  681 caatct 686  Q
    | ||||    
T  21979992 cgatct 21979997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 638 - 733
Target Start/End: Complemental strand, 37741519 - 37741423
Alignment:
Q  638 aatttgataggatcttacgatccatgttacgatc-cccgattcacaatctagtgacccctccccgatcttgcccaggatctcgactctgactacctt 733  Q
    |||||| ||||||||| |||||| |||||||||| ||||||| || |||| |||||| ||| ||||||||||| |||||||||| | ||||||||||    
T  37741519 aatttggtaggatcttgcgatccgtgttacgatctcccgatttacgatcttgtgacctctctccgatcttgcctaggatctcgattttgactacctt 37741423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 602 - 686
Target Start/End: Complemental strand, 13956561 - 13956475
Alignment:
Q  602 tatgtatgaatagacatgcaatatatataaattt-taaatttgataggatcttacgatccatgttacgat-ccccgattcacaatct 686  Q
    |||||||||||  | ||||||||||||| ||||| |||||||| |||||||||||||||| ||||||||| ||||||||||| ||||    
T  13956561 tatgtatgaattcatatgcaatatatatgaatttctaaatttggtaggatcttacgatccgtgttacgatcccccgattcacgatct 13956475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 638 - 733
Target Start/End: Complemental strand, 35846512 - 35846416
Alignment:
Q  638 aatttgataggatcttacgatccatgttacgatcccc-gattcacaatctagtgacccctccccgatcttgcccaggatctcgactctgactacctt 733  Q
    |||||| || ||||||||||||  ||||||||||||| ||||||| |||| |||| ||||| ||||||||||| | |||||||| | ||||||||||    
T  35846512 aatttggtaagatcttacgatctgtgttacgatcccccgattcacgatcttgtgaaccctctccgatcttgcctaagatctcgattttgactacctt 35846416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 617 - 731
Target Start/End: Original strand, 36497876 - 36497992
Alignment:
Q  617 atgcaatatatataaattt-taaatttgataggatcttacgatccatgttacgat-ccccgattcacaatctagtgacccctccccgatcttgcccagga 714  Q
    ||||||||||||| ||||| |||||||| |||||||||||||||| ||||||||| ||||||||||| ||||  ||   ||| ||||||||| |  ||||    
T  36497876 atgcaatatatatgaatttctaaatttggtaggatcttacgatccgtgttacgatcccccgattcacgatctcatgggtcctacccgatcttacttagga 36497975  T
Q  715 tctcgactctgactacc 731  Q
    |||||| |||| |||||    
T  36497976 tctcgagtctgtctacc 36497992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 674 - 733
Target Start/End: Complemental strand, 41274593 - 41274534
Alignment:
Q  674 cgattcacaatctagtgacccctccccgatcttgcccaggatctcgactctgactacctt 733  Q
    |||||||| |||| |||||||||| ||||||||||| |||||||||| | ||||||||||    
T  41274593 cgattcacgatcttgtgacccctctccgatcttgcctaggatctcgattttgactacctt 41274534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 625 - 670
Target Start/End: Original strand, 33509948 - 33509994
Alignment:
Q  625 tatataaattt-taaatttgataggatcttacgatccatgttacgat 670  Q
    ||||||||||| |||||||| |||| |||||||||||||||||||||    
T  33509948 tatataaatttctaaatttggtaggttcttacgatccatgttacgat 33509994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 638 - 733
Target Start/End: Original strand, 47042 - 47138
Alignment:
Q  638 aatttgataggatcttacgatccatgttacgatcc-ccgattcacaatctagtgacccctccccgatcttgcccaggatctcgactctgactacctt 733  Q
    |||||| |||||||||||||||| ||||||||||| |||||| || |||| || ||| ||| ||||||||||| |||||||||| | ||||||||||    
T  47042 aatttggtaggatcttacgatccgtgttacgatcctccgatttacgatcttgtaacctctctccgatcttgcctaggatctcgattttgactacctt 47138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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