View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2054_low_5 (Length: 311)

Name: NF2054_low_5
Description: NF2054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2054_low_5
NF2054_low_5
[»] chr7 (4 HSPs)
chr7 (141-291)||(48612056-48612206)
chr7 (179-234)||(30225772-30225827)
chr7 (23-63)||(48611937-48611978)
chr7 (161-217)||(31193771-31193827)
[»] chr2 (3 HSPs)
chr2 (162-232)||(40629288-40629359)
chr2 (156-234)||(26714044-26714122)
chr2 (198-234)||(27023466-27023502)
[»] chr1 (2 HSPs)
chr1 (170-237)||(7628849-7628917)
chr1 (197-234)||(17616977-17617014)
[»] chr4 (5 HSPs)
chr4 (186-234)||(4576629-4576677)
chr4 (198-234)||(38303785-38303821)
chr4 (163-234)||(6828958-6829029)
chr4 (198-234)||(36706375-36706411)
chr4 (198-234)||(39722013-39722049)
[»] scaffold0373 (1 HSPs)
scaffold0373 (163-234)||(7391-7462)
[»] chr5 (1 HSPs)
chr5 (201-234)||(9114133-9114166)
[»] chr3 (1 HSPs)
chr3 (198-234)||(29697600-29697636)


Alignment Details
Target: chr7 (Bit Score: 122; Significance: 1e-62; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 141 - 291
Target Start/End: Original strand, 48612056 - 48612206
Alignment:
Q  141 ggttaacatgtccggtttacgtttattaatctacattgtttttctcatattttattttattattataaactagaattgaaatatcatatcatatcatgca 240  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  48612056 ggttaacatgtccggtttacgtttattaatctacattgtttttctcatatttaattttattattataaactagaattgaaatatcatatcatatcatgca 48612155  T
Q  241 taatcnnnnnnnttaaatgtcatgttaaataacaaatgaaagtttaatatt 291  Q
    |||||       |||||||||||||||||||| ||||||||||||||||||    
T  48612156 taatcaaaaaaattaaatgtcatgttaaataataaatgaaagtttaatatt 48612206  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 179 - 234
Target Start/End: Complemental strand, 30225827 - 30225772
Alignment:
Q  179 tttttctcatattttattttattattataaactagaattgaaatatcatatcatat 234  Q
    ||||| |||||||| | |||||||||||||| |||||||||||||| |||||||||    
T  30225827 tttttttcatatttaaatttattattataaattagaattgaaatataatatcatat 30225772  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 23 - 63
Target Start/End: Original strand, 48611937 - 48611978
Alignment:
Q  23 cacagagcataagaaaagtc-tttaagaccaatcagactggc 63  Q
    |||||||||||||||||||| |||||||||||||||||||||    
T  48611937 cacagagcataagaaaagtcttttaagaccaatcagactggc 48611978  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 217
Target Start/End: Original strand, 31193771 - 31193827
Alignment:
Q  161 gtttattaatctacattgtttttctcatattttattttattattataaactagaatt 217  Q
    |||||||||| ||||||  ||||||||||||| ||| || |||||||| ||||||||    
T  31193771 gtttattaatgtacattacttttctcatatttaattgtaatattataagctagaatt 31193827  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 162 - 232
Target Start/End: Complemental strand, 40629359 - 40629288
Alignment:
Q  162 tttattaatctacatt-gtttttctcatattttattttattattataaactagaattgaaatatcatatcat 232  Q
    ||||||| |||||||| ||||||| ||||||| | |||||||||||||||||||||| |||||| |||||||    
T  40629359 tttattagtctacattagtttttcgcatatttaaatttattattataaactagaattaaaatataatatcat 40629288  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 156 - 234
Target Start/End: Original strand, 26714044 - 26714122
Alignment:
Q  156 tttacgtttattaatctacattgtttttctcatattttattttattattataaactagaattgaaatatcatatcatat 234  Q
    |||| |||||||| |||||||| ||||| | |||||| | | ||||||| | ||||||||||||||||| |||||||||    
T  26714044 tttaagtttattagtctacattatttttttaatatttaaatatattattgttaactagaattgaaatatgatatcatat 26714122  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 234
Target Start/End: Complemental strand, 27023502 - 27023466
Alignment:
Q  198 tattattataaactagaattgaaatatcatatcatat 234  Q
    ||||||||||||||| ||||||||||| |||||||||    
T  27023502 tattattataaactacaattgaaatatgatatcatat 27023466  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 170 - 237
Target Start/End: Complemental strand, 7628917 - 7628849
Alignment:
Q  170 tctacatt-gtttttctcatattttattttattattataaactagaattgaaatatcatatcatatcat 237  Q
    |||||||| ||||||| ||||||| ||| ||||||| |||| |||||||||||||| ||||||||||||    
T  7628917 tctacattagtttttcacatatttaattgtattattgtaaagtagaattgaaatatgatatcatatcat 7628849  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 234
Target Start/End: Original strand, 17616977 - 17617014
Alignment:
Q  197 ttattattataaactagaattgaaatatcatatcatat 234  Q
    ||||||||||||| |||||||||||||| |||||||||    
T  17616977 ttattattataaattagaattgaaatatgatatcatat 17617014  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 234
Target Start/End: Original strand, 4576629 - 4576677
Alignment:
Q  186 catattttattttattattataaactagaattgaaatatcatatcatat 234  Q
    ||||||| | ||||||||||||||||||||||||||||| |||| ||||    
T  4576629 catatttaaatttattattataaactagaattgaaatatgatataatat 4576677  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 198 - 234
Target Start/End: Complemental strand, 38303821 - 38303785
Alignment:
Q  198 tattattataaactagaattgaaatatcatatcatat 234  Q
    ||||||||||||||||||||||||||| |||||||||    
T  38303821 tattattataaactagaattgaaatataatatcatat 38303785  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 163 - 234
Target Start/End: Original strand, 6828958 - 6829029
Alignment:
Q  163 ttattaatctacattgtttttctcatattttattttattattataaactagaattgaaatatcatatcatat 234  Q
    |||||| | |||||| |||||| ||||||| | | |||||||||||| |||||||||||||| |||| ||||    
T  6828958 ttattagtttacattatttttcgcatatttaaatgtattattataaattagaattgaaatatgatataatat 6829029  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 234
Target Start/End: Complemental strand, 36706411 - 36706375
Alignment:
Q  198 tattattataaactagaattgaaatatcatatcatat 234  Q
    |||||||||||| |||||||||||||| |||||||||    
T  36706411 tattattataaagtagaattgaaatatgatatcatat 36706375  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 234
Target Start/End: Original strand, 39722013 - 39722049
Alignment:
Q  198 tattattataaactagaattgaaatatcatatcatat 234  Q
    ||||||||||||||||||||||||||| | |||||||    
T  39722013 tattattataaactagaattgaaatatgaaatcatat 39722049  T

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Target: scaffold0373 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0373
Description:

Target: scaffold0373; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 163 - 234
Target Start/End: Complemental strand, 7462 - 7391
Alignment:
Q  163 ttattaatctacattgtttttctcatattttattttattattataaactagaattgaaatatcatatcatat 234  Q
    |||||| | |||||| |||||| ||||||| | | |||||||||||| |||||||||||||| |||| ||||    
T  7462 ttattagtttacattatttttcgcatatttaaatgtattattataaattagaattgaaatatgatataatat 7391  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 234
Target Start/End: Complemental strand, 9114166 - 9114133
Alignment:
Q  201 tattataaactagaattgaaatatcatatcatat 234  Q
    ||||||||| ||||||||||||||||||||||||    
T  9114166 tattataaattagaattgaaatatcatatcatat 9114133  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 234
Target Start/End: Complemental strand, 29697636 - 29697600
Alignment:
Q  198 tattattataaactagaattgaaatatcatatcatat 234  Q
    ||||||||||||||||||||||||||| ||| |||||    
T  29697636 tattattataaactagaattgaaatataataccatat 29697600  T

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