View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2054_low_7 (Length: 248)
Name: NF2054_low_7
Description: NF2054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2054_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 94; Significance: 5e-46; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 30672826 - 30672919
Alignment:
| Q |
1 |
atacaaatttgatactctaactcctttaccagatagcataccttagaatatcttcagtagtataaaccctctctactcaacaaacctttgcaga |
94 |
Q |
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| T |
30672826 |
atacaaatttgatactctaactcctttaccagatagcataccttagaatatcttcagtagtataaaccctctctactcaacaaacctttgcaga |
30672919 |
T |
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Target: chr8; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 129 - 233
Target Start/End: Original strand, 30672958 - 30673062
Alignment:
| Q |
129 |
atatatatattcacttttgnnnnnnnngtgatgcattgaagtacaaaattgaaacacacattctattgagttcatgcaccaatcccaacacaaacaaaca |
228 |
Q |
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| T |
30672958 |
atatatatattcacttttgttttttttgtgatgcattgaagtacaaaattgaaacacacattctattgagttcatgcaccaatcccaacacaaacaaaca |
30673057 |
T |
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| Q |
229 |
aataa |
233 |
Q |
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| T |
30673058 |
aataa |
30673062 |
T |
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