View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2054_low_8 (Length: 247)
Name: NF2054_low_8
Description: NF2054
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2054_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 140 - 223
Target Start/End: Complemental strand, 30672635 - 30672552
Alignment:
| Q |
140 |
aaatgttaaagtcttcttcaatagctgcaaattgagacaaaattgttctgtatttcttttcaatctctctggagttctgttagg |
223 |
Q |
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| T |
30672635 |
aaatgttaaagtcttcttcaatagctgcaaattgagacaaaattgttctgtatttcttttcaatctctcgggagttctgttagg |
30672552 |
T |
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Target: chr8; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 30672774 - 30672700
Alignment:
| Q |
1 |
cttggtttgaatttctggtcgttggattaatctaacagtgaagattactataacttttcagattaatccaaatat |
75 |
Q |
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| T |
30672774 |
cttggtttgaatttctggtcgttggattaatctaacagtgaagattactataacttttcagattaatccaaatat |
30672700 |
T |
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