View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20550_high_8 (Length: 264)

Name: NF20550_high_8
Description: NF20550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20550_high_8
NF20550_high_8
[»] chr7 (11 HSPs)
chr7 (1-256)||(37525675-37525921)
chr7 (1-256)||(37535314-37535559)
chr7 (1-258)||(37540443-37540703)
chr7 (1-238)||(6778451-6778676)
chr7 (1-98)||(37466581-37466678)
chr7 (25-178)||(6774188-6774332)
chr7 (1-98)||(37476370-37476467)
chr7 (10-98)||(37480892-37480980)
chr7 (56-106)||(37557508-37557558)
chr7 (56-104)||(37564400-37564448)
chr7 (17-110)||(37580645-37580738)
[»] chr1 (1 HSPs)
chr1 (72-251)||(45071705-45071878)
[»] chr8 (1 HSPs)
chr8 (16-98)||(37363022-37363104)
[»] chr3 (1 HSPs)
chr3 (72-178)||(50915054-50915157)
[»] chr5 (2 HSPs)
chr5 (58-110)||(8981939-8981991)
chr5 (56-110)||(8991442-8991496)
[»] chr4 (1 HSPs)
chr4 (55-103)||(55118763-55118811)


Alignment Details
Target: chr7 (Bit Score: 204; Significance: 1e-111; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 37525921 - 37525675
Alignment:
Q  1 cacataattgaggatgattgtgccgacaacgtaatccctgttcctaatgtcactggcaagatattggcgaaggtgattgaatactgtaagaagcatgtcg 100  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37525921 cacataatcgaggatgattgtgccgacaacgtaatccctgttcctaatgtcactggcaagatattggcgaaggtgattgaatactgtaagaagcatgtcg 37525822  T
Q  101 aggctgctgccgcgacgagttctgatgagaaagtttcagaggatgatcttaagaactgggatgctgattttgcgaaggaggttgatcaggaaacgctttt 200  Q
    ||||         ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||    
T  37525821 aggc---------gacgagttctgatgaaaaagtttcagaggatgatcttaagaactgggatgctgatttcgcgaaggaggttgatcagcaaacgctttt 37525731  T
Q  201 ccaaatcctccttgcagcaaactatttgaatatcaagaacttgctggatctctgct 256  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  37525730 ccaaatcctccttgcagcaaactatttgaatatcaagaacttgttggatctctgct 37525675  T

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Target: chr7; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 37535314 - 37535559
Alignment:
Q  1 cacataattgaggatgattgtgccgacaacgtaatccctgttcctaatgtcactggcaagatattggcgaaggtgattgaatactgtaagaagcatgtcg 100  Q
    |||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  37535314 cacataatcgaggatgattgtgccgacaacgtaatcc-tgttcctaatgtcactggcaagatattggcaaaggtgattgaatactgtaagaagcatgtcg 37535412  T
Q  101 aggctgctgccgcgacgagttctgatgagaaagtttcagaggatgatcttaagaactgggatgctgattttgcgaaggaggttgatcaggaaacgctttt 200  Q
    ||||         ||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||  ||||||||||||||||| ||||||||||    
T  37535413 aggc---------gacgagttctgatgaaaaagtttcagaggatgatcttaagaactgggatgcagatttcacgaaggaggttgatcagcaaacgctttt 37535503  T
Q  201 ccaaatcctccttgcagcaaactatttgaatatcaagaacttgctggatctctgct 256  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37535504 ccaaatcctccttgcagcaaactatttgaatatcaagaacttgctggatctctgct 37535559  T

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Target: chr7; HSP #3
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 1 - 258
Target Start/End: Original strand, 37540443 - 37540703
Alignment:
Q  1 cacataattgaggatgattgtgccgacaacgtaatccctgttcctaatgtcactggcaagatattggcgaaggtgattgaatactgtaagaagcatgtcg 100  Q
    ||||| || ||||| |||||| ||||||||| |||||| |||||||| || ||  |  ||||||||||||||||||||||||| ||||||||||||||||    
T  37540443 cacatgatcgaggacgattgtaccgacaacggaatcccagttcctaacgtgaccagtcagatattggcgaaggtgattgaataatgtaagaagcatgtcg 37540542  T
Q  101 aggct---gctgccgcgacgagttctgatgagaaagtttcagaggatgatcttaagaactgggatgctgattttgcgaaggaggttgatcaggaaacgct 197  Q
    |||||   || |||||  | |||| | |||| |||| ||||||||||||||||||||||||||||||||| ||   |||| ||||| |||||| ||||||    
T  37540543 aggctgccgccgccgcagcaagtttttatgaaaaaggttcagaggatgatcttaagaactgggatgctgaattcatgaagcaggttaatcagggaacgct 37540642  T
Q  198 tttccaaatcctccttgcagcaaactatttgaatatcaagaacttgctggatctctgctcc 258  Q
    |||  | |||||||||||  | ||||| ||| ||| ||||||||||  |||||||||||||    
T  37540643 tttttagatcctccttgcttcgaactacttggatagcaagaacttgagggatctctgctcc 37540703  T

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Target: chr7; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 6778451 - 6778676
Alignment:
Q  1 cacataattgaggatgattgtgccgacaacgtaatccctgttcctaatgtcactggcaagatattggcgaaggtgattgaatactgtaagaagcatgtcg 100  Q
    ||||| || ||||| |||||| ||||||||| |||||| |||||||| || || ||  ||||||||||||||||||||||||||||||||||||||||      
T  6778451 cacatgatcgaggacgattgtaccgacaacggaatcccagttcctaacgtgaccggtcagatattggcgaaggtgattgaatactgtaagaagcatgt-- 6778548  T
Q  101 aggctgctgccgcgacgagttctgatgagaaagtttcagaggatgatcttaagaactgggatgctgattttgcgaaggaggttgatcaggaaacgctttt 200  Q
        || |||||   ||||||| ||||| |||  |||||| |||||||||||||| ||||||||||| || | ||   ||||||||||||| || |||||    
T  6778549 ----tgatgccg---cgagttccgatgaaaaaccttcagaagatgatcttaagaattgggatgctgaattcgtga---aggttgatcaggatacactttt 6778638  T
Q  201 ccaaatcctccttgcagcaaactatttgaatatcaaga 238  Q
    | |  || | ||||| ||||| || |||||||||||||    
T  6778639 cgatctcattcttgctgcaaattacttgaatatcaaga 6778676  T

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Target: chr7; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 37466678 - 37466581
Alignment:
Q  1 cacataattgaggatgattgtgccgacaacgtaatccctgttcctaatgtcactggcaagatattggcgaaggtgattgaatactgtaagaagcatgt 98  Q
    ||||| || ||||| |||||||||||||||| |||||| ||||  || || || ||||||||||| |||||||||||||||||||| |||||||||||    
T  37466678 cacatgatcgaggacgattgtgccgacaacgcaatcccagttcagaacgttaccggcaagatattagcgaaggtgattgaatactgcaagaagcatgt 37466581  T

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Target: chr7; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 25 - 178
Target Start/End: Original strand, 6774188 - 6774332
Alignment:
Q  25 gacaacgtaatccctgttcctaatgtcactggcaagatattggcgaaggtgattgaatactgtaagaagcatgtcgaggctgctgccgcgacgagttctg 124  Q
    ||||||| |||||  |||||||| || || ||  |||||||||||||||||||||||||||||||||||||| ||||      |||||   ||||||| |    
T  6774188 gacaacggaatcctagttcctaacgtgaccggtcagatattggcgaaggtgattgaatactgtaagaagcatatcga------tgccg---cgagttccg 6774278  T
Q  125 atgagaaagtttcagaggatgatcttaagaactgggatgctgattttgcgaagg 178  Q
    |||| |||  |||||| |||||||||||||| ||||||||||| |||| |||||    
T  6774279 atgaaaaaccttcagaagatgatcttaagaattgggatgctgaatttgtgaagg 6774332  T

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Target: chr7; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 37476467 - 37476370
Alignment:
Q  1 cacataattgaggatgattgtgccgacaacgtaatccctgttcctaatgtcactggcaagatattggcgaaggtgattgaatactgtaagaagcatgt 98  Q
    ||||| || ||||| |||||| ||||||||| ||| || |||||||| || || ||  ||||||||||||||||||| ||||||||||||||||||||    
T  37476467 cacatgatcgaggacgattgtaccgacaacggaataccagttcctaacgtgaccggtcagatattggcgaaggtgatagaatactgtaagaagcatgt 37476370  T

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Target: chr7; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 10 - 98
Target Start/End: Complemental strand, 37480980 - 37480892
Alignment:
Q  10 gaggatgattgtgccgacaacgtaatccctgttcctaatgtcactggcaagatattggcgaaggtgattgaatactgtaagaagcatgt 98  Q
    ||||| |||||| ||||||||| ||| || |||||||| || || ||  ||||||||||||||||||| ||||||||||||||||||||    
T  37480980 gaggacgattgtaccgacaacggaattccagttcctaacgtgaccggtcagatattggcgaaggtgatagaatactgtaagaagcatgt 37480892  T

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Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 56 - 106
Target Start/End: Original strand, 37557508 - 37557558
Alignment:
Q  56 gcaagatattggcgaaggtgattgaatactgtaagaagcatgtcgaggctg 106  Q
    ||||||||||||||| |||||||||||||||||||| ||||||||||||||    
T  37557508 gcaagatattggcgatggtgattgaatactgtaagatgcatgtcgaggctg 37557558  T

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Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 56 - 104
Target Start/End: Original strand, 37564400 - 37564448
Alignment:
Q  56 gcaagatattggcgaaggtgattgaatactgtaagaagcatgtcgaggc 104  Q
    ||||||||||||| ||||||| |||||||||||||| ||||||||||||    
T  37564400 gcaagatattggcaaaggtgactgaatactgtaagatgcatgtcgaggc 37564448  T

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Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 110
Target Start/End: Original strand, 37580645 - 37580738
Alignment:
Q  17 attgtgccgacaacgtaatccctgttcctaatgtcactggcaagatattggcgaaggtgattgaatactgtaagaagcatgtcgaggctgctgc 110  Q
    |||||||||| || |||||| || |||| || ||||   |||||||  |||| ||||| ||||||||||||||||||||||| ||||| |||||    
T  37580645 attgtgccgaaaatgtaatcactattccaaacgtcaacagcaagatcctggcaaaggttattgaatactgtaagaagcatgtggaggccgctgc 37580738  T

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Target: chr1 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 72 - 251
Target Start/End: Complemental strand, 45071878 - 45071705
Alignment:
Q  72 ggtgattgaatactgtaagaagcatgtcgaggctgctgccgcgacgagttctgatgagaaagtttcagaggatgatcttaagaactgggatgctgatttt 171  Q
    ||||||||| |||||||||||||||||||| ||| |||| ||||   |||||||||| |||  |||||| |||||||||||||| ||||||||||| ||     
T  45071878 ggtgattgattactgtaagaagcatgtcgatgctactgctgcga---gttctgatgaaaaaccttcagaagatgatcttaagaattgggatgctgaattc 45071782  T
Q  172 gcgaaggaggttgatcaggaaacgcttttccaaatcctccttgcagcaaactatttgaatatcaagaacttgctggatct 251  Q
    | ||   ||||||||||||  ||||||||  |  || | ||||| |||||||| ||| ||||||||  ||||||||||||    
T  45071781 gtga---aggttgatcaggctacgctttttgacctcattcttgctgcaaactacttggatatcaagggcttgctggatct 45071705  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 98
Target Start/End: Complemental strand, 37363104 - 37363022
Alignment:
Q  16 gattgtgccgacaacgtaatccctgttcctaatgtcactggcaagatattggcgaaggtgattgaatactgtaagaagcatgt 98  Q
    ||||||||||||||||  ||||||||||  || ||  | || | ||| |||||||||||||||||||||||||||||||||||    
T  37363104 gattgtgccgacaacgctatccctgttcaaaacgtggcgggaatgattttggcgaaggtgattgaatactgtaagaagcatgt 37363022  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 72 - 178
Target Start/End: Original strand, 50915054 - 50915157
Alignment:
Q  72 ggtgattgaatactgtaagaagcatgtcgaggctgctgccgcgacgagttctgatgagaaagtttcagaggatgatcttaagaactgggatgctgatttt 171  Q
    ||||||||||||||||||||||||||||||   ||| |||||  | ||||||||||  |||  |||||| ||||||||| || | ||||||||||| |||    
T  50915054 ggtgattgaatactgtaagaagcatgtcga---tgccgccgcagcaagttctgatggaaaaccttcagaagatgatcttgaggattgggatgctgaattt 50915150  T
Q  172 gcgaagg 178  Q
    | |||||    
T  50915151 gtgaagg 50915157  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 110
Target Start/End: Original strand, 8981939 - 8981991
Alignment:
Q  58 aagatattggcgaaggtgattgaatactgtaagaagcatgtcgaggctgctgc 110  Q
    ||||| ||||||||||||||||| || || ||||||||||| |||||||||||    
T  8981939 aagatcttggcgaaggtgattgagtattgcaagaagcatgttgaggctgctgc 8981991  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 110
Target Start/End: Original strand, 8991442 - 8991496
Alignment:
Q  56 gcaagatattggcgaaggtgattgaatactgtaagaagcatgtcgaggctgctgc 110  Q
    ||||||| ||||||||||||||||| || || ||||||||||| || ||||||||    
T  8991442 gcaagatcttggcgaaggtgattgagtattgcaagaagcatgttgacgctgctgc 8991496  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 103
Target Start/End: Original strand, 55118763 - 55118811
Alignment:
Q  55 ggcaagatattggcgaaggtgattgaatactgtaagaagcatgtcgagg 103  Q
    |||||||| ||| ||||||| ||||||||||||||||||||||| ||||    
T  55118763 ggcaagatcttgacgaaggttattgaatactgtaagaagcatgtggagg 55118811  T

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