View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20550_low_1 (Length: 630)

Name: NF20550_low_1
Description: NF20550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20550_low_1
NF20550_low_1
[»] chr3 (5 HSPs)
chr3 (412-621)||(1138409-1138618)
chr3 (19-205)||(1138868-1139054)
chr3 (245-365)||(1138665-1138785)
chr3 (27-143)||(48119056-48119173)
chr3 (556-597)||(28802764-28802805)
[»] chr2 (2 HSPs)
chr2 (560-597)||(3110531-3110568)
chr2 (556-593)||(28044709-28044746)
[»] chr1 (4 HSPs)
chr1 (556-597)||(6025961-6026002)
chr1 (560-595)||(1118941-1118976)
chr1 (552-597)||(26161596-26161641)
chr1 (96-143)||(41475368-41475416)
[»] chr5 (1 HSPs)
chr5 (559-591)||(28734169-28734201)
[»] chr7 (2 HSPs)
chr7 (551-594)||(32888960-32889003)
chr7 (559-595)||(7245942-7245978)
[»] chr6 (3 HSPs)
chr6 (561-595)||(2730831-2730865)
chr6 (559-596)||(26373115-26373152)
chr6 (252-300)||(18699812-18699860)
[»] chr4 (3 HSPs)
chr4 (556-594)||(207500-207538)
chr4 (560-597)||(47789196-47789233)
chr4 (287-315)||(51034024-51034052)


Alignment Details
Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 412 - 621
Target Start/End: Complemental strand, 1138618 - 1138409
Alignment:
Q  412 gtctgttacaaataatgtggagaaatgaaaatggcattttttgaagctaatgtgtgaacgaaagatggggacatcacgacggtggttcaatatcgaccac 511  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| |||||||||||||||||||||||    
T  1138618 gtctgtcacaaataatgtggagaaatgaaaatggcattttttgaagctaatctgtgaatgaaagatggggacatcatgacggtggttcaatatcgaccac 1138519  T
Q  512 tctgtcgtagctgtatgaaggtaaataatccactgcaagagtggtatgctatttagtacaaagagttgtcaaatagtggctatagctaaagcattgtaac 611  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1138518 tctgtcgtagctgtatgaaggtaaataatccactgcaagagtggtatgctatttagtacaaagagttgtcaaatagtggctatagctaaagcattgtaac 1138419  T
Q  612 atagtataat 621  Q
    ||||||||||    
T  1138418 atagtataat 1138409  T

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Target: chr3; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 19 - 205
Target Start/End: Complemental strand, 1139054 - 1138868
Alignment:
Q  19 ctaagtctatgatataatatcacgcattactcagttcaaaacgtggcatatgattgaaatggaataaaaggttacgcaaagaatatggttgctaacatat 118  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||| | |||||||||||||||||||    
T  1139054 ctaagtctatgatataatatcacgcattactcagttcaaaaagtggcatacgattgaaatggaataaaaggctacgcacaaaatatggttgctaacatat 1138955  T
Q  119 gacttcgaattttaccttccttctttggtatgctttagttgcatattcaaaattggtgggataatctattgcaacagtgttactaca 205  Q
    |||||| |||||||||||||||||| |||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||    
T  1138954 gacttcaaattttaccttccttcttaggtatgctttagttgcatattcaatattggcgggataatctattgcaacagtgttactaca 1138868  T

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Target: chr3; HSP #3
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 245 - 365
Target Start/End: Complemental strand, 1138785 - 1138665
Alignment:
Q  245 ggggtgattgaaattgtggatctctggatggaaacacttcagaacttccagaaccaagtttacttcttcgacactaaaacttcagtttgcttgcatttat 344  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1138785 ggggtgattgaaattgtggatctcttgatggaaacacttcagaacttccagaaccaagtttacttcttcgacactaaaacttcagtttgcttgcatttat 1138686  T
Q  345 tttcttctgattggttgtttg 365  Q
    |||||||||||||||||||||    
T  1138685 tttcttctgattggttgtttg 1138665  T

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Target: chr3; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 27 - 143
Target Start/End: Original strand, 48119056 - 48119173
Alignment:
Q  27 atgatataatatcacgcattactcagttcaaaacgtggcatatgattgaaatggaataaaaggttacgcaaagaatatggttgctaacatatgacttcga 126  Q
    |||||||||||||| |||||||||||||||| | ||| ||||  ||||| ||| | |||||||  ||  ||||||||||| | |||||||||||||||||    
T  48119056 atgatataatatcatgcattactcagttcaacaagtgccatacaattgagatgaactaaaaggccacataaagaatatggcttctaacatatgacttcga 48119155  T
Q  127 -attttaccttccttctt 143  Q
      ||||||||||||||||    
T  48119156 ctttttaccttccttctt 48119173  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 556 - 597
Target Start/End: Complemental strand, 28802805 - 28802764
Alignment:
Q  556 tatgctatttagtacaaagagttgtcaaatagtggctatagc 597  Q
    ||||||||||| || |||| ||||||||||||||||||||||    
T  28802805 tatgctatttaatataaagtgttgtcaaatagtggctatagc 28802764  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000009; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 560 - 597
Target Start/End: Complemental strand, 3110568 - 3110531
Alignment:
Q  560 ctatttagtacaaagagttgtcaaatagtggctatagc 597  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  3110568 ctatttagtacaaagcgttgtcaaatagtggctatagc 3110531  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 556 - 593
Target Start/End: Complemental strand, 28044746 - 28044709
Alignment:
Q  556 tatgctatttagtacaaagagttgtcaaatagtggcta 593  Q
    ||||| ||||||||||||| ||||||||||||||||||    
T  28044746 tatgcgatttagtacaaagtgttgtcaaatagtggcta 28044709  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000009; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 556 - 597
Target Start/End: Complemental strand, 6026002 - 6025961
Alignment:
Q  556 tatgctatttagtacaaagagttgtcaaatagtggctatagc 597  Q
    ||||||||||||||||||  ||||||||||||||||||||||    
T  6026002 tatgctatttagtacaaaatgttgtcaaatagtggctatagc 6025961  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 560 - 595
Target Start/End: Original strand, 1118941 - 1118976
Alignment:
Q  560 ctatttagtacaaagagttgtcaaatagtggctata 595  Q
    ||||||||||||||| ||||||||||||||||||||    
T  1118941 ctatttagtacaaagtgttgtcaaatagtggctata 1118976  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 552 - 597
Target Start/End: Complemental strand, 26161641 - 26161596
Alignment:
Q  552 gtggtatgctatttagtacaaagagttgtcaaatagtggctatagc 597  Q
    |||||||||||||||||||||||  |||||||||||  ||||||||    
T  26161641 gtggtatgctatttagtacaaagtattgtcaaatagcagctatagc 26161596  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 96 - 143
Target Start/End: Original strand, 41475368 - 41475416
Alignment:
Q  96 aaagaatatggttgctaacatatgacttcga-attttaccttccttctt 143  Q
    ||||||||||| | |||||||||||||||||  ||||||||||||||||    
T  41475368 aaagaatatggcttctaacatatgacttcgactttttaccttccttctt 41475416  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 559 - 591
Target Start/End: Complemental strand, 28734201 - 28734169
Alignment:
Q  559 gctatttagtacaaagagttgtcaaatagtggc 591  Q
    |||||||||||||||||||||||||||||||||    
T  28734201 gctatttagtacaaagagttgtcaaatagtggc 28734169  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 551 - 594
Target Start/End: Original strand, 32888960 - 32889003
Alignment:
Q  551 agtggtatgctatttagtacaaagagttgtcaaatagtggctat 594  Q
    |||| |||||||||||||||||||  ||||||||||||||||||    
T  32888960 agtgatatgctatttagtacaaagtattgtcaaatagtggctat 32889003  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 559 - 595
Target Start/End: Complemental strand, 7245978 - 7245942
Alignment:
Q  559 gctatttagtacaaagagttgtcaaatagtggctata 595  Q
    |||||||||||||||| |||||||||||| |||||||    
T  7245978 gctatttagtacaaagtgttgtcaaatagcggctata 7245942  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000006; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 561 - 595
Target Start/End: Complemental strand, 2730865 - 2730831
Alignment:
Q  561 tatttagtacaaagagttgtcaaatagtggctata 595  Q
    |||||||||||||| ||||||||||||||||||||    
T  2730865 tatttagtacaaagtgttgtcaaatagtggctata 2730831  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 559 - 596
Target Start/End: Original strand, 26373115 - 26373152
Alignment:
Q  559 gctatttagtacaaagagttgtcaaatagtggctatag 596  Q
    |||||||||||||||| ||||||||||||||| |||||    
T  26373115 gctatttagtacaaagtgttgtcaaatagtggttatag 26373152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 252 - 300
Target Start/End: Complemental strand, 18699860 - 18699812
Alignment:
Q  252 ttgaaattgtggatctctggatggaaacacttcagaacttccagaacca 300  Q
    |||||||||| ||||||| || |||| ||||||| ||||||||||||||    
T  18699860 ttgaaattgtagatctctagaaggaagcacttcataacttccagaacca 18699812  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000006; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 556 - 594
Target Start/End: Original strand, 207500 - 207538
Alignment:
Q  556 tatgctatttagtacaaagagttgtcaaatagtggctat 594  Q
    |||||||||||||||||||  ||||||||||||||||||    
T  207500 tatgctatttagtacaaagtattgtcaaatagtggctat 207538  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 560 - 597
Target Start/End: Original strand, 47789196 - 47789233
Alignment:
Q  560 ctatttagtacaaagagttgtcaaatagtggctatagc 597  Q
    ||||||||||||||  ||||||||||||||||||||||    
T  47789196 ctatttagtacaaactgttgtcaaatagtggctatagc 47789233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 287 - 315
Target Start/End: Complemental strand, 51034052 - 51034024
Alignment:
Q  287 aacttccagaaccaagtttacttcttcga 315  Q
    |||||||||||||||||||||||||||||    
T  51034052 aacttccagaaccaagtttacttcttcga 51034024  T

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