View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20550_low_10 (Length: 252)

Name: NF20550_low_10
Description: NF20550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20550_low_10
NF20550_low_10
[»] chr7 (3 HSPs)
chr7 (1-252)||(34553560-34553818)
chr7 (1-197)||(34290750-34290946)
chr7 (28-213)||(34565265-34565450)
[»] chr1 (1 HSPs)
chr1 (30-252)||(130978-131200)
[»] chr5 (1 HSPs)
chr5 (28-252)||(15894955-15895179)


Alignment Details
Target: chr7 (Bit Score: 208; Significance: 1e-114; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 34553560 - 34553818
Alignment:
Q  1 tatgctattaatagattgataatcaata-------cttgcaataaatttgactccaaatatgcagagcgctgaaaatcactataaagatccacataaatc 93  Q
    |||||||||||||||||||||||| |||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34553560 tatgctattaatagattgataatctatagcaccgacttgcaataaatttgactccaaatatgcagagcgctgaaaatcactataaagatccacataaatc 34553659  T
Q  94 caaaacttttgtaggttgtataagttcaagtccttgactgaaatttcagtccctctgactttcatctcaacaacctttagctgatgagatatctttttca 193  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34553660 caaaacttttgtaggttgtataagttcaagtccttgactgaaatttcagtccctctgactttcatctcaacaacctttagctgatgagatatctttttca 34553759  T
Q  194 actcattgatcgcaatttcannnnnnncccaaggaaaattgtccatccttaaataaagt 252  Q
    ||||||||||||||||||||       ||||||||||||||||||||||||||||||||    
T  34553760 actcattgatcgcaatttcatttttttcccaaggaaaattgtccatccttaaataaagt 34553818  T

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Target: chr7; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 34290750 - 34290946
Alignment:
Q  1 tatgctattaatagattgataatcaatacttgcaataaatttgactccaaatatgcagagcgctgaaaatcactataaagatccacataaatccaaaact 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  34290750 tatgctattaatagattgataatcaatacttgcaataaatttgactccaaatatgcagagtgctgaaaatcactataaagatccacataaatccaaaact 34290849  T
Q  101 tttgtaggttgtataagttcaagtccttgactgaaatttcagtccctctgactttcatctcaacaacctttagctgatgagatatctttttcaactc 197  Q
    |||| | |||||  ||   ||| ||||||||| ||||||||| |||||  |||||||||||||||||||||||||||||||||||||||||||||||    
T  34290850 tttgcaagttgttgaaaaccaaatccttgactaaaatttcagcccctccaactttcatctcaacaacctttagctgatgagatatctttttcaactc 34290946  T

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Target: chr7; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 28 - 213
Target Start/End: Original strand, 34565265 - 34565450
Alignment:
Q  28 acttgcaataaatttgactccaaatatgcagagcgctgaaaatcactataaagatccacataaatccaaaacttttgtaggttgtataagttcaagtcct 127  Q
    |||||||||||| |||| |||||||||  ||| || ||||||||| | ||  |||||||||||| |||||||||||| | ||| |  |||| ||| ||||    
T  34565265 acttgcaataaagttgagtccaaatataaagatcgttgaaaatcagtgtatggatccacataaacccaaaacttttgcaagtttttgaagtccaaatcct 34565364  T
Q  128 tgactgaaatttcagtccctctgactttcatctcaacaacctttagctgatgagatatctttttcaactcattgatcgcaatttca 213  Q
    ||||| || |||||| ||| || | ||| ||||||||||||||||||||||||||||| |||||||| || |||| ||||| ||||    
T  34565365 tgactaaactttcagcccccctaaattttatctcaacaacctttagctgatgagatatttttttcaattcgttgagcgcaacttca 34565450  T

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Target: chr1 (Bit Score: 118; Significance: 3e-60; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 30 - 252
Target Start/End: Complemental strand, 131200 - 130978
Alignment:
Q  30 ttgcaataaatttgactccaaatatgcagagcgctgaaaatcactataaagatccacataaatccaaaacttttgtaggttgtataagttcaagtccttg 129  Q
    |||||||||||||||||| |||| |||||||||||||||||||||||||| ||||||||| ||||||||||||||||| |||||||||| ||| ||||||    
T  131200 ttgcaataaatttgactcgaaatgtgcagagcgctgaaaatcactataaatatccacatagatccaaaacttttgtagattgtataagtccaaatccttg 131101  T
Q  130 actgaaatttcagtccctctgactttcatctcaacaacctttagctgatgagatatctttttcaactcattgatcgcaatttcannnnnnncccaaggaa 229  Q
    | | ||| |||||||||||| ||||| |||||||  ||||||||||||| |||||||||||| ||||| ||||| ||||  |||        ||||||||    
T  131100 attaaaacttcagtccctctaacttttatctcaaagacctttagctgataagatatcttttttaactcgttgattgcaacctcatttcctttccaaggaa 131001  T
Q  230 aattgtccatccttaaataaagt 252  Q
    |||||||||||||||||||||||    
T  131000 aattgtccatccttaaataaagt 130978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 28 - 252
Target Start/End: Original strand, 15894955 - 15895179
Alignment:
Q  28 acttgcaataaatttgactccaaatatgcagagcgctgaaaatcactataaagatccacataaatccaaaacttttgtaggttgtataagttcaagtcct 127  Q
    |||||||||||||||||||||||||||| ||| |  ||||||| |   ||  |||||||||||| ||||||||| |||| |||||  |||  ||| ||||    
T  15894955 acttgcaataaatttgactccaaatatgaagatctttgaaaattagagtatcgatccacataaacccaaaacttctgtaagttgttgaagaccaaatcct 15895054  T
Q  128 tgactgaaatttcagtccctctgactttcatctcaacaacctttagctgatgagatatctttttcaactcattgatcgcaatttcannnnnnncccaagg 227  Q
    ||| | |||||||||| ||||| | ||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| ||||        ||||||    
T  15895055 tgagtaaaatttcagtacctctaaatttcatctcaacaacctttagctgatgagatatctttttcagctcgttgatcgcaacttcatttttattccaagg 15895154  T
Q  228 aaaattgtccatccttaaataaagt 252  Q
    |||||||| |||||| || ||||||    
T  15895155 aaaattgtacatcctaaagtaaagt 15895179  T

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