View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20550_low_17 (Length: 226)
Name: NF20550_low_17
Description: NF20550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20550_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 11628751 - 11628958
Alignment:
| Q |
1 |
tggcccaaaagcttttttccgaaataagacgaaaagttccaaaaggcctggaaagcatgcatagagacaagttgaagatgattatcaaaaagttgttgca |
100 |
Q |
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| T |
11628751 |
tggcccaaaagcttttttccgaaataagacgaaaagttccaaaaggcctggaaagcatgcatagagacaagttgaaaatgattatcaaaaagctgttgca |
11628850 |
T |
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| Q |
101 |
gagaaggaagtacctggttgtatttgatgatgtgtggcataggcatgaatgggaagctgtcagatatgcacttccaaaaaacaattatggcagcaggatc |
200 |
Q |
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| T |
11628851 |
gagaaggaagtacctggttgtatttgatgatgtgtggcataggcatgaatgggaagctgtcagatatgcacttccaaaaaacaattatggcagcaggatc |
11628950 |
T |
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| Q |
201 |
atgctcac |
208 |
Q |
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|||||||| |
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| T |
11628951 |
atgctcac |
11628958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 110 - 208
Target Start/End: Original strand, 11651165 - 11651263
Alignment:
| Q |
110 |
gtacctggttgtatttgatgatgtgtggcataggcatgaatgggaagctgtcagatatgcacttccaaaaaacaattatggcagcaggatcatgctcac |
208 |
Q |
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|||||| ||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| ||| |||||||||||| |||| |
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| T |
11651165 |
gtacctagttgtatttgatgatgtgtggcatatacatgaatgggaagctgtcaaatatgcacttccaaaaaacaattgtggtagcaggatcatgatcac |
11651263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 11650857 - 11650969
Alignment:
| Q |
1 |
tggcccaaaagcttttttccgaaataagacgaaaagttccaaaaggcctggaaagcatgcatagagacaagttgaagatgattatcaaaaagttgttgca |
100 |
Q |
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||||| |||| |||||||| ||||||||||||||||||||| ||||| |||||| |||||| || |||||||||||||||||||| ||| || | ||||| |
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| T |
11650857 |
tggccgaaaaacttttttctgaaataagacgaaaagttccagaaggcttggaaaacatgcacagtgacaagttgaagatgattattaaagagctcttgca |
11650956 |
T |
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| Q |
101 |
gagaaggaagtac |
113 |
Q |
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| T |
11650957 |
gagaaggaggtac |
11650969 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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