View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20550_low_3 (Length: 537)
Name: NF20550_low_3
Description: NF20550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20550_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 431; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 65 - 522
Target Start/End: Complemental strand, 199604 - 199138
Alignment:
| Q |
65 |
ttcatgctcatcctgctccaccgccaccacagcctggtcatcccggtcctccaccgccacgtcctccgtattattaagtaattttcttcctatttactat |
164 |
Q |
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| T |
199604 |
ttcatgctcatcctgctccaccgccaccacagcctggtcatcccggtcctccaccgccacgtcctccgtattattaagtaattttcttcctatttactat |
199505 |
T |
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| Q |
165 |
atattaattatgattatctactaccataagttgatccttccatatatgtattaatcattatactacatgtacttataataactatggatctactagcata |
264 |
Q |
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| T |
199504 |
atattaattatgattatctactaccataagttgatccttccatatatgtattaatcattatactacatgtacttataataactatggatctactagcata |
199405 |
T |
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| Q |
265 |
agtttttgcttattaattacttgcttatgtatgcatattttcaactatcctttgtagattcaatatttgtatgaactattcttaagtaccgtaaaatttg |
364 |
Q |
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| T |
199404 |
agtttttgcttattaattacttgcttatgtatgcatattttcaactatcctttgtagattcaatatttgtatgaactattcttaagtaccgtaaaatttg |
199305 |
T |
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| Q |
365 |
cattactaataattgtatggataattatttatgattttgcccagttggataaacagcttatagaataaatgttt---------agctcttatgtataagt |
455 |
Q |
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| T |
199304 |
cattactaataattgtatggataattatttatgattttgcccagttggataaacagcttatagaataaatgtttcacatgataagctcttatgtataagt |
199205 |
T |
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| Q |
456 |
tcatgtaggtttaaacaaacaagaaacttaagtaagtaagtttgacaaggttaattaaagtaagaaa |
522 |
Q |
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| T |
199204 |
tcatgtaggtttaaacaaaccagaaacttaagtaagtaagtttgacaaggttaattaaagtaagaaa |
199138 |
T |
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