View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20550_low_4 (Length: 451)

Name: NF20550_low_4
Description: NF20550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20550_low_4
NF20550_low_4
[»] chr1 (14 HSPs)
chr1 (11-433)||(34905118-34905542)
chr1 (198-433)||(34896755-34896988)
chr1 (75-203)||(34896486-34896617)
chr1 (11-78)||(34896394-34896461)
chr1 (75-180)||(34910281-34910386)
chr1 (291-410)||(34910609-34910722)
chr1 (198-264)||(34910499-34910565)
chr1 (11-76)||(34910185-34910251)
chr1 (198-295)||(28542970-28543066)
chr1 (25-76)||(28543315-28543366)
chr1 (340-385)||(28545269-28545314)
chr1 (353-425)||(28542856-28542925)
chr1 (150-180)||(28543202-28543232)
chr1 (25-73)||(28545552-28545600)


Alignment Details
Target: chr1 (Bit Score: 400; Significance: 0; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 11 - 433
Target Start/End: Original strand, 34905118 - 34905542
Alignment:
Q  11 aatataaaaacaataaaaaggcagataagtaagccaaaagatgccaatgattaccattattagataatacaaatctcagttgtcatgtaatctttaggtc 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  34905118 aatataaaaacaataaaaaggcagataagtaagccaaaagatgccaatgattaccattattagata-tacaaatctcagttgtcatgtaatctttaggtc 34905216  T
Q  111 ttcaaaaagaaatgtaaattaaaattgaatagagaatacatatagctgaaagaaatcacattccttcatact---ctcgttcttaagtgtttcacatgaa 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||    
T  34905217 ttcaaaaagaaatgtaaattaaaattgaatagagaatacatatagctgaaagaaatcacattccttcatactgttctcgttcttaagtgtttcacatgaa 34905316  T
Q  208 atcttcattagagaagaaagaaaatacaataataataaattcagatttagcaaagcttgacagttatttttgcatatcattcataaaagaattggctaag 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34905317 atcttcattagagaagaaagaaaatacaataataataaattcagatttagcaaagcttgacagttatttttgcatatcattcataaaagaattggctaag 34905416  T
Q  308 cactacaaaatatccatgtgtatgaaaactgttatttcacttctttaaaatattgtgcttctcacacatcacatgacactaccaataataaactggtttc 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34905417 cactacaaaatatccatgtgtatgaaaactgttatttcacttctttaaaatattgtgcttctcacacatcacatgacactaccaataataaactggtttc 34905516  T
Q  408 aaaagctccaatgaagactgtctact 433  Q
    ||||||||| ||||||||||||||||    
T  34905517 aaaagctccgatgaagactgtctact 34905542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 198 - 433
Target Start/End: Original strand, 34896755 - 34896988
Alignment:
Q  198 ttcacatgaaatcttcattagagaagaaagaaaatacaataataataaattcagatttagcaaagcttgacagttatttttgcatatcattcataaaaga 297  Q
    |||||||||||||||||||||| |||||||||||||  |||||||||||||||||||||||||||||||||||||||||| ||| ||||  ||||||||     
T  34896755 ttcacatgaaatcttcattagaaaagaaagaaaatatgataataataaattcagatttagcaaagcttgacagttattttcgcaaatcaaccataaaagc 34896854  T
Q  298 attggctaagcactacaaaatatccatgtgtatgaaaactgttatttcacttctttaaaatattgtgcttctcacacatcacatgacactaccaataata 397  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||  |||||||||||||||||||||||||||||| |||||| ||||    
T  34896855 attggctaagcactacaaaatatccatgtgtatgaaaactgttatttcgcttcttt--aatattgtgcttctcacacatcacatgacattaccaacaata 34896952  T
Q  398 aactggtttcaaaagctccaatgaagactgtctact 433  Q
    |||||||||||||||||||||||||||| |||||||    
T  34896953 aactggtttcaaaagctccaatgaagacagtctact 34896988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 75 - 203
Target Start/End: Original strand, 34896486 - 34896617
Alignment:
Q  75 taatacaaatctcagttgtcatgtaatctttaggtcttcaaaaagaaatgtaaattaaaattgaatagagaatacatatagctgaaagaaatcacattcc 174  Q
    ||||||||||||||||||| | |||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||     
T  34896486 taatacaaatctcagttgttacgtaatctttaggtcttcaaaaagaaatgtaaactaaaattgaatagagaatgcatatagctgaaagaaatcacattct 34896585  T
Q  175 ttcatac---tctcgttcttaagtgtttcaca 203  Q
    ||| |||   ||| ||||||||||||||||||    
T  34896586 ttcgtactgttcttgttcttaagtgtttcaca 34896617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 11 - 78
Target Start/End: Original strand, 34896394 - 34896461
Alignment:
Q  11 aatataaaaacaataaaaaggcagataagtaagccaaaagatgccaatgattaccattattagataat 78  Q
    ||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||    
T  34896394 aatataaaaacaataaaaaggcagaaaagtaagccaaaagatgctaatgattaccattattagataat 34896461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 75 - 180
Target Start/End: Original strand, 34910281 - 34910386
Alignment:
Q  75 taatacaaatctcagttgtcatgtaatctttaggtcttcaaaaagaaatgtaaattaaaattgaatagagaatacatatagctgaaagaaatcacattcc 174  Q
    |||||||||||| ||| || |||||||||||||||||| | ||||||  ||||||||  || || ||||||| ||||||| |||||||||||||||||||    
T  34910281 taatacaaatcttagtcgttatgtaatctttaggtctttacaaagaaccgtaaattagcatcgactagagaacacatataactgaaagaaatcacattcc 34910380  T
Q  175 ttcata 180  Q
    ||||||    
T  34910381 ttcata 34910386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 291 - 410
Target Start/End: Original strand, 34910609 - 34910722
Alignment:
Q  291 taaaagaattggctaagcactacaaaatatccatgtgtatgaaaactgttatttcacttctttaaaatattgtgcttctcacacatcacatgacactacc 390  Q
    |||||| ||| |||||||||||||||  ||| |||||||||||||||  ||||||||||   ||||||||||||||||||||||||||||||   |||||    
T  34910609 taaaagcattagctaagcactacaaataatctatgtgtatgaaaactcgtatttcactt---taaaatattgtgcttctcacacatcacatggtgctacc 34910705  T
Q  391 aataataaactggtttcaaa 410  Q
       |||||||||||||||||    
T  34910706 ---aataaactggtttcaaa 34910722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 198 - 264
Target Start/End: Original strand, 34910499 - 34910565
Alignment:
Q  198 ttcacatgaaatcttcattagagaagaaagaaaatacaataataataaattcagatttagcaaagct 264  Q
    |||||||||||||||||||| ||||||||||||||||||||||| || ||||||| | |||||||||    
T  34910499 ttcacatgaaatcttcattaaagaagaaagaaaatacaataatagtacattcagagtaagcaaagct 34910565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 11 - 76
Target Start/End: Original strand, 34910185 - 34910251
Alignment:
Q  11 aatataaaaacaataaaa-aggcagataagtaagccaaaagatgccaatgattaccattattagata 76  Q
    ||||||| |||||||||| ||||||| |||||||||||||||||| ||||| |||||||||||||||    
T  34910185 aatataataacaataaaaaaggcagaaaagtaagccaaaagatgctaatgaataccattattagata 34910251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 198 - 295
Target Start/End: Complemental strand, 28543066 - 28542970
Alignment:
Q  198 ttcacatgaaatcttcattagagaagaaagaaaatacaataataataaattcagatttagcaaagcttgacagttatttttgcatatcattcataaaa 295  Q
    ||||||||||| |||||||| |||||||| |||||||||||||| |||||||| | | | ||||||| |||| || | |||||| ||| |||||||||    
T  28543066 ttcacatgaaaacttcattaaagaagaaataaaatacaataatagtaaattcaaagtaaccaaagctagacaatt-tgtttgcaaatccttcataaaa 28542970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 25 - 76
Target Start/End: Complemental strand, 28543366 - 28543315
Alignment:
Q  25 aaaaaggcagataagtaagccaaaagatgccaatgattaccattattagata 76  Q
    ||||||| ||| || ||||||||||||||| |||||||||||||||||||||    
T  28543366 aaaaagggagaaaactaagccaaaagatgctaatgattaccattattagata 28543315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 340 - 385
Target Start/End: Complemental strand, 28545314 - 28545269
Alignment:
Q  340 tatttcacttctttaaaatattgtgcttctcacacatcacatgaca 385  Q
    ||||| |||||| |||||||||||| ||||||||||||||||||||    
T  28545314 tattttacttctctaaaatattgtgattctcacacatcacatgaca 28545269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 353 - 425
Target Start/End: Complemental strand, 28542925 - 28542856
Alignment:
Q  353 taaaatattgtgcttctcacacatcacatgacactaccaataataaactggtttcaaaagctccaatgaagac 425  Q
    |||| |||||||||||||||| ||||| || ||||||||   |||||||||||||||| ||| | ||||||||    
T  28542925 taaactattgtgcttctcacaaatcacctggcactacca---ataaactggtttcaaaggcttccatgaagac 28542856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 150 - 180
Target Start/End: Complemental strand, 28543232 - 28543202
Alignment:
Q  150 atatagctgaaagaaatcacattccttcata 180  Q
    |||||||||||||||||||||||||||||||    
T  28543232 atatagctgaaagaaatcacattccttcata 28543202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 25 - 73
Target Start/End: Complemental strand, 28545600 - 28545552
Alignment:
Q  25 aaaaaggcagataagtaagccaaaagatgccaatgattaccattattag 73  Q
    ||||||||||| | |||||||||||||||| |||  |||||||||||||    
T  28545600 aaaaaggcagaaacgtaagccaaaagatgctaatatttaccattattag 28545552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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