View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20550_low_5 (Length: 338)
Name: NF20550_low_5
Description: NF20550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20550_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 321
Target Start/End: Complemental strand, 37219070 - 37218751
Alignment:
| Q |
1 |
tatgatattataatcaatgtactattttcatttggtcttcctagccttagtgaactgtatatagccttaattaaagaacattgtacaatttaatactttt |
100 |
Q |
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| T |
37219070 |
tatgatattataatcaatgtactattctcatttggtcttcctagccttagtgaactatatatagccttaattaaagaacattgtacaatttaatactttt |
37218971 |
T |
|
| Q |
101 |
taattaaattatgatgatgctcctacatcattcgaaatagaattgttggatttaagtatgagttgttaatcttacattgactatgannnnnnnnaaataa |
200 |
Q |
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| T |
37218970 |
taattaaattatgatgatgctcctgcat-attcgaaatagaattgttggatttaagtatgagttgttaatcttacattgactatgattttttttaagtaa |
37218872 |
T |
|
| Q |
201 |
ttgactatgaatgtgttcaatattagatatataagatatttgatatatttcatgtttcaagatattttgtgaagatgtaacacattcctctcttattggt |
300 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37218871 |
ttgactatgaatgtgttccatattagatatataagatatttgatatatttcatgtttcaagatattttgtgaagatgtaacacattcctctcttattggt |
37218772 |
T |
|
| Q |
301 |
attagagctttggtctaatgt |
321 |
Q |
| |
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||||||||||||||||||||| |
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| T |
37218771 |
attagagctttggtctaatgt |
37218751 |
T |
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