View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20550_low_7 (Length: 270)
Name: NF20550_low_7
Description: NF20550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20550_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 236; Significance: 1e-130; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 34905130 - 34904883
Alignment:
| Q |
1 |
ttgtttttatattattagattttgcagttttctaattctaactgagaaccaacttttctactttataggatcatcagcgtttggtcagaagcctgctttt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34905130 |
ttgtttttatattattagattttgcagttttctaattctaactgagaaccaacttttctactttataggatcatcagcgtttggtcagaagcctgctttt |
34905031 |
T |
|
| Q |
101 |
ggaggttttggctctactcctactcaaacaagtccatttggaagtgccacccaaccatcacaaccagcatttggaagtaacacccaacagtcgcaaccag |
200 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34905030 |
ggaggttttggctctaatcctactcaaacaagtccatttggaagtgccacccaaccatcacaaccagcatttggaagtaacacccaacagtcgcaaccag |
34904931 |
T |
|
| Q |
201 |
tattcggaagcagcatatttacaccttttggcgcttcatcccagccag |
248 |
Q |
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|||| |||||||||||||| |||||||||||||||||||||||||||| |
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| T |
34904930 |
tatttggaagcagcatattaacaccttttggcgcttcatcccagccag |
34904883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 34896406 - 34896187
Alignment:
| Q |
1 |
ttgtttttatattattagattttgcagttttctaattctaactgagaaccaacttttctactttataggatcatcagcgtttggtcagaagcctgctttt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||| |
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| T |
34896406 |
ttgtttttatattattagattttgcagttttctaattctaactgagatccaacttttctcctttataggatcatcagtgtttggtcagaagcctgctttt |
34896307 |
T |
|
| Q |
101 |
ggaggttttggctctactcctactcaaacaagtccatttggaagtgccacccaaccatcacaaccagcatttggaagtaacacccaacagtcgcaaccag |
200 |
Q |
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| T |
34896306 |
ggaggttttggctctactcctactcaaacaagtccatttggaagtgccacccaaccatcacaaccagcatttggaagtaacacccaacagtcgcaaccag |
34896207 |
T |
|
| Q |
201 |
tattcggaagcagcatattt |
220 |
Q |
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||| ||||||||||||||| |
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| T |
34896206 |
catttggaagcagcatattt |
34896187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 10 - 181
Target Start/End: Original strand, 28545608 - 28545778
Alignment:
| Q |
10 |
tattattagattttgcagttttctaattctaactgagaaccaacttttctactttataggatcatcagcgtttggtcagaagcctgcttttggaggtttt |
109 |
Q |
| |
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|||||||| |||||| ||||||||||||||| || | |||||| ||| | | | |||||||||| ||||||||| |||||||||||| ||||||| |
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| T |
28545608 |
tattattatattttgtagttttctaattctatctta-aaccaagtttgttccctcccaggatcatcactctttggtcaggagcctgcttttgtaggtttt |
28545706 |
T |
|
| Q |
110 |
ggctctactcctactcaaacaagtccatttggaagtgccacccaaccatcacaaccagcatttggaagtaac |
181 |
Q |
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|||||||||||||||||||||||||||| | ||||||||| ||||||||||| ||||||||||||||||||| |
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| T |
28545707 |
ggctctactcctactcaaacaagtccatgtagaagtgccatccaaccatcacgaccagcatttggaagtaac |
28545778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 12 - 142
Target Start/End: Complemental strand, 34910194 - 34910064
Alignment:
| Q |
12 |
ttattagattttgcagttttctaattctaactgagaaccaacttttctactttataggatcatcagcgtttggtcagaagcctgcttttggaggttttgg |
111 |
Q |
| |
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|||||| |||||||||||||||||||||| ||||||||||||| | | ||| |||||| ||| ||||||||| ||||||||||||||||||||| |
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| T |
34910194 |
ttattatattttgcagttttctaattctatctgagaaccaactctcttccttcccaggatcgtcattctttggtcaggtgcctgcttttggaggttttgg |
34910095 |
T |
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| Q |
112 |
ctctactcctactcaaacaagtccatttgga |
142 |
Q |
| |
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|| ||| |||||||||| |||||| |||||| |
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| T |
34910094 |
ctatacacctactcaaataagtccttttgga |
34910064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 10 - 182
Target Start/End: Original strand, 28543373 - 28543544
Alignment:
| Q |
10 |
tattattagattttgcagttttctaattctaactgagaaccaacttttctactttataggatcatcagcgtttggtcagaagcctgcttttggaggtttt |
109 |
Q |
| |
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|||||||| ||||||| |||||||||||||| ||| |||| ||| | | ||| |||||||||| | ||| | ||| ||||| |||||||||||||| |
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| T |
28543373 |
tattattatattttgc-gttttctaattctatttgaaaaccgactctcttccttcccaggatcatcatccttttgccaggagccttcttttggaggtttt |
28543471 |
T |
|
| Q |
110 |
ggctctactcctactcaaacaagtccatttggaagtgccacccaaccatcacaaccagcatttggaagtaaca |
182 |
Q |
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||||| | |||||||| | |||||| |||||| |||||| |||||||||||||||| ||||||||| |||| |
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| T |
28543472 |
ggctcgatgcctactcagataagtccttttggatgtgccatacaaccatcacaaccagtatttggaagcaaca |
28543544 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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