View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20550_low_9 (Length: 256)
Name: NF20550_low_9
Description: NF20550
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20550_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-119; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 7 - 243
Target Start/End: Original strand, 43549454 - 43549690
Alignment:
| Q |
7 |
ttttgttgcaaaggaccttgtatgcggactacgttgtggagaccttgaggcggtagtgttgatgcatatggattttgtttggttatgaagatatgttttg |
106 |
Q |
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| T |
43549454 |
ttttgttgcaaaggaccttgtatgcggactacgttgtggagaccttgaggcggtagtgttgatgcatatggattttgtttggttatgaagatatgttttg |
43549553 |
T |
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| Q |
107 |
aaggctgccattttataactatgattacgacgnnnnnnntgatttgtaccgtaatcctaaatttccgacaagattaatatgaattttttagcccttatat |
206 |
Q |
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| T |
43549554 |
aaggctgccattttataactatgattacgacgaaaaaaatgatttgtaccgtaatcctaaatttccgacaagattaatatgaattttttagcccttatat |
43549653 |
T |
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| Q |
207 |
tagtgtgtagtatttaacctagacttttccttctgtg |
243 |
Q |
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| T |
43549654 |
tagtgtgtagtatttaacctagacttttccttctgtg |
43549690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 17 - 138
Target Start/End: Original strand, 29369456 - 29369576
Alignment:
| Q |
17 |
aaggaccttgtatgcggactacgttgtggagaccttgaggcggtagtgttgatgcatat-ggattttgtttggttatgaagatatgttttgaaggctgcc |
115 |
Q |
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| T |
29369456 |
aaggaccttgtatgcagactacgttgtggagagtttgaggcggtagtattgatgcatatgggattttgtttggtcttgaag--atgttttgaagactgca |
29369553 |
T |
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| Q |
116 |
attttataactatgattacgacg |
138 |
Q |
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| T |
29369554 |
attttataactatgattacgacg |
29369576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 17 - 126
Target Start/End: Original strand, 50901883 - 50901992
Alignment:
| Q |
17 |
aaggaccttgtatgcggactacgttgtggagaccttgaggcggtagtgttgatgcatatggattttgtttggttatgaagatatgttttgaaggctgcca |
116 |
Q |
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||||| |||||||||||||| ||||| ||||| ||||||| | | ||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
50901883 |
aaggatcttgtatgcggactgcgttgcggagagcttgaggtgttgttgttgatgcatatggattttgtttggtctcgaagatatgttttgaaggctgcca |
50901982 |
T |
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| Q |
117 |
ttttataact |
126 |
Q |
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|||||||||| |
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| T |
50901983 |
ttttataact |
50901992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 179 - 243
Target Start/End: Original strand, 17749338 - 17749404
Alignment:
| Q |
179 |
attaatatgaattttttagcccttata--ttagtgtgtagtatttaacctagacttttccttctgtg |
243 |
Q |
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| T |
17749338 |
attaatatgaattttttagcccttatatattagtgtgtagtatttaacctagacttttccttttgtg |
17749404 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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