View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20551_high_11 (Length: 346)
Name: NF20551_high_11
Description: NF20551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20551_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 139; Significance: 1e-72; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 34 - 189
Target Start/End: Complemental strand, 1348203 - 1348044
Alignment:
| Q |
34 |
gagaagagcaaagtgaagtaataaagtgtatatattctctgtttctgaacgctaatggggtttac----cttcaaaaccccaaaaactgactgagaggaa |
129 |
Q |
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| T |
1348203 |
gagaagagcaaagtgaagtaataaagtgtatatattctctgtttctgaacgctaatggggtttacttaccttcaaaaccccaaaaactgactgagagaaa |
1348104 |
T |
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| Q |
130 |
tctcttttcatcatataatcgaatcccaatggaatctctctcatcgactcattcaacact |
189 |
Q |
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| T |
1348103 |
tctcttttcatcatataatcgaatcccaatggaatctctctcatcgactcattcaacact |
1348044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 216 - 317
Target Start/End: Complemental strand, 1348032 - 1347931
Alignment:
| Q |
216 |
gcactgcttcttccgtcgccggcggtggcggagtagcaccgcgaccttccttcctgaaaatcaatcaactccaaccttcaaactcctcacactcattggt |
315 |
Q |
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| T |
1348032 |
gcactgcttcttccgtcgccgtcggtggcggagtagcaccgcgaccttccttcctgaaaatcaatcaactccaaccttcaaactcctcacactcattggt |
1347933 |
T |
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| Q |
316 |
tg |
317 |
Q |
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|| |
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| T |
1347932 |
tg |
1347931 |
T |
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