View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20551_high_17 (Length: 320)

Name: NF20551_high_17
Description: NF20551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20551_high_17
NF20551_high_17
[»] chr2 (14 HSPs)
chr2 (170-310)||(1895402-1895542)
chr2 (170-310)||(17281934-17282075)
chr2 (170-310)||(1551588-1551728)
chr2 (170-283)||(3921584-3921697)
chr2 (172-310)||(17375271-17375409)
chr2 (22-93)||(1895254-1895325)
chr2 (28-89)||(1551809-1551870)
chr2 (30-87)||(17282158-17282215)
chr2 (170-243)||(34660278-34660351)
chr2 (30-89)||(3921444-3921503)
chr2 (32-89)||(17375153-17375210)
chr2 (30-89)||(4869507-4869566)
chr2 (170-243)||(4869637-4869710)
chr2 (31-83)||(14950835-14950887)
[»] chr6 (5 HSPs)
chr6 (170-310)||(20740570-20740710)
chr6 (170-307)||(21881459-21881596)
chr6 (28-93)||(20740453-20740518)
chr6 (30-89)||(21881318-21881377)
chr6 (31-83)||(32747716-32747768)
[»] chr4 (17 HSPs)
chr4 (167-310)||(47518441-47518584)
chr4 (170-310)||(53202258-53202398)
chr4 (170-261)||(34227057-34227148)
chr4 (170-310)||(23054224-23054363)
chr4 (30-89)||(53202118-53202177)
chr4 (30-89)||(47518662-47518721)
chr4 (192-309)||(6410005-6410122)
chr4 (25-93)||(23054441-23054508)
chr4 (28-89)||(34227204-34227265)
chr4 (175-240)||(12469342-12469407)
chr4 (31-83)||(45873102-45873154)
chr4 (34-77)||(12489216-12489259)
chr4 (192-240)||(12466698-12466746)
chr4 (31-83)||(14441115-14441167)
chr4 (33-83)||(12130516-12130566)
chr4 (31-83)||(38093215-38093267)
chr4 (31-83)||(55728692-55728744)
[»] chr5 (20 HSPs)
chr5 (167-310)||(18696922-18697065)
chr5 (170-310)||(7766995-7767135)
chr5 (193-280)||(41355543-41355630)
chr5 (170-305)||(27170084-27170219)
chr5 (30-93)||(38958379-38958442)
chr5 (34-89)||(41355722-41355777)
chr5 (170-241)||(38958230-38958301)
chr5 (170-236)||(7271826-7271892)
chr5 (170-243)||(6030388-6030461)
chr5 (30-89)||(7271708-7271767)
chr5 (35-89)||(27170275-27170329)
chr5 (31-83)||(26331217-26331269)
chr5 (30-89)||(26656630-26656688)
chr5 (30-89)||(26928217-26928275)
chr5 (34-89)||(40599985-40600040)
chr5 (31-69)||(42221388-42221426)
chr5 (34-89)||(7767203-7767255)
chr5 (31-83)||(24867205-24867257)
chr5 (193-243)||(26656780-26656830)
chr5 (193-243)||(26928367-26928417)
[»] chr8 (8 HSPs)
chr8 (167-310)||(10408814-10408957)
chr8 (170-296)||(5994622-5994748)
chr8 (170-308)||(6444027-6444165)
chr8 (31-83)||(5994485-5994537)
chr8 (30-89)||(10408702-10408761)
chr8 (31-83)||(15050162-15050214)
chr8 (34-78)||(3763045-3763089)
chr8 (31-83)||(25142902-25142954)
[»] chr1 (13 HSPs)
chr1 (197-310)||(34117991-34118104)
chr1 (167-283)||(34654967-34655083)
chr1 (30-89)||(34654830-34654889)
chr1 (171-281)||(26236671-26236781)
chr1 (193-283)||(39709015-39709105)
chr1 (170-243)||(615753-615826)
chr1 (30-93)||(39709180-39709243)
chr1 (193-310)||(11407975-11408092)
chr1 (28-88)||(34117896-34117955)
chr1 (36-89)||(615638-615691)
chr1 (34-83)||(11814695-11814744)
chr1 (35-83)||(2077483-2077531)
chr1 (31-83)||(14351174-14351226)
[»] chr7 (4 HSPs)
chr7 (30-89)||(11698554-11698613)
chr7 (170-310)||(3302567-3302707)
chr7 (30-89)||(3302427-3302486)
chr7 (31-83)||(31039000-31039052)
[»] chr3 (5 HSPs)
chr3 (170-243)||(18269763-18269836)
chr3 (30-89)||(43275830-43275890)
chr3 (25-77)||(18269919-18269971)
chr3 (34-83)||(31699221-31699270)
chr3 (198-244)||(43275999-43276045)
[»] scaffold0157 (1 HSPs)
scaffold0157 (34-77)||(31218-31261)
[»] scaffold0027 (1 HSPs)
scaffold0027 (31-83)||(2938-2989)


Alignment Details
Target: chr2 (Bit Score: 129; Significance: 9e-67; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 170 - 310
Target Start/End: Original strand, 1895402 - 1895542
Alignment:
Q  170 ccaaaatcagtaccaccaagaaaaccaccatgaagtaccacaaactaacacaaccaaagatccatcgaaaccatataagttcataagcgaacctagatat 269  Q
    ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1895402 ccaaaatcaataccaccaagaaaaccaccatgaagtaccacaaaccaacacaaccaaagatccatcgaaaccatataagttcataagcgaacctagatat 1895501  T
Q  270 gacccatcaccaccatcatgaccgatcaatcaccacctatg 310  Q
    ||| |||||||||||||||||||||||||||||||||||||    
T  1895502 gactcatcaccaccatcatgaccgatcaatcaccacctatg 1895542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 170 - 310
Target Start/End: Complemental strand, 17282075 - 17281934
Alignment:
Q  170 ccaaaatcagtaccaccaagaaaaccaccatgaagtaccacaaa-ctaacacaaccaaagatccatcgaaaccatataagttcataagcgaacctagata 268  Q
    |||||||||| ||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  17282075 ccaaaatcagcaccaccaagaaaaccaccatgaagtaccacaaaaccaacacaaccaaagatccatcgaaaccatataagttcataagcaaacctagata 17281976  T
Q  269 tgacccatcaccaccatcatgaccgatcaatcaccacctatg 310  Q
    ||| |||||||||||||  |||| |||| |||||||||||||    
T  17281975 tgatccatcaccaccattgtgactgatccatcaccacctatg 17281934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 170 - 310
Target Start/End: Complemental strand, 1551728 - 1551588
Alignment:
Q  170 ccaaaatcagtaccaccaagaaaaccaccatgaagtaccacaaactaacacaaccaaagatccatcgaaaccatataagttcataagcgaacctagatat 269  Q
    |||||||||| || |||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| | ||    
T  1551728 ccaaaatcagcactaccaagaaaaccaccacgaagtaccacaaaccaacacaaccaaagatccatcgaaactatataagttcataagcgaacctatacat 1551629  T
Q  270 gacccatcaccaccatcatgaccgatcaatcaccacctatg 310  Q
    || |||||||||||||| |||| |||| |||||||||||||    
T  1551628 gatccatcaccaccatcgtgactgatccatcaccacctatg 1551588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 170 - 283
Target Start/End: Original strand, 3921584 - 3921697
Alignment:
Q  170 ccaaaatcagtaccaccaagaaaaccaccatgaagtaccacaaactaacacaaccaaagatccatcgaaaccatataagttcataagcgaacctagatat 269  Q
    |||||||||| |||||||||||||||||| ||||||||||||||| |||||||||||| ||||||| ||||||||||||||||||||||||| |||||||    
T  3921584 ccaaaatcagcaccaccaagaaaaccaccgtgaagtaccacaaaccaacacaaccaaacatccatcaaaaccatataagttcataagcgaacttagatat 3921683  T
Q  270 gacccatcaccacc 283  Q
    || |||||||||||    
T  3921684 gatccatcaccacc 3921697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 172 - 310
Target Start/End: Original strand, 17375271 - 17375409
Alignment:
Q  172 aaaatcagtaccaccaagaaaaccaccatgaagtaccacaaactaacacaaccaaagatccatcgaaaccatataagttcataagcgaacctagatatga 271  Q
    |||||||| ||||||| ||||||   ||||||| ||||||||| ||||||||||||||| |||||||||||||  |||||||||||||||||||||||||    
T  17375271 aaaatcagcaccaccatgaaaactgtcatgaagcaccacaaaccaacacaaccaaagattcatcgaaaccataacagttcataagcgaacctagatatga 17375370  T
Q  272 cccatcaccaccatcatgaccgatcaatcaccacctatg 310  Q
     |||||||||||||| ||| ||||| |||||||||||||    
T  17375371 tccatcaccaccatcgtgatcgatccatcaccacctatg 17375409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 22 - 93
Target Start/End: Original strand, 1895254 - 1895325
Alignment:
Q  22 catcatcatcaccaaaactaccattgaccaccacaaaaatcaccattaaccctcacctaaaagcaacatcag 93  Q
    ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  1895254 catcaccatcaccaaaactaccattgaacaccacaaaaatcaccattaaccctcacctaaaagcaacatcag 1895325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 28 - 89
Target Start/End: Complemental strand, 1551870 - 1551809
Alignment:
Q  28 catcaccaaaactaccattgaccaccacaaaaatcaccattaaccctcacctaaaagcaaca 89  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  1551870 catcaccaaaactaccattgaccacctcaaaaatcaccattaaccctcacctaaaagcaaca 1551809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 30 - 87
Target Start/End: Complemental strand, 17282215 - 17282158
Alignment:
Q  30 tcaccaaaactaccattgaccaccacaaaaatcaccattaaccctcacctaaaagcaa 87  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  17282215 tcaccaaacctaccattgaccaccacaaaaatcaccattaaccctcacctaaaagcaa 17282158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 170 - 243
Target Start/End: Original strand, 34660278 - 34660351
Alignment:
Q  170 ccaaaatcagtaccaccaagaaaaccaccatgaagtaccacaaactaacacaaccaaagatccatcgaaaccat 243  Q
    |||||||||| ||||||| ||||||| |||||||| ||||||||| ||||||||||||||||||||||||||||    
T  34660278 ccaaaatcagcaccaccatgaaaaccgccatgaagcaccacaaaccaacacaaccaaagatccatcgaaaccat 34660351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 30 - 89
Target Start/End: Original strand, 3921444 - 3921503
Alignment:
Q  30 tcaccaaaactaccattgaccaccacaaaaatcaccattaaccctcacctaaaagcaaca 89  Q
    ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||    
T  3921444 tcaccaaaactactatttaccaccacaaaaatcaccattaaccctcacctaaaagcaaca 3921503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 32 - 89
Target Start/End: Original strand, 17375153 - 17375210
Alignment:
Q  32 accaaaactaccattgaccaccacaaaaatcaccattaaccctcacctaaaagcaaca 89  Q
    ||||||||||||||||||||||||||||| ||| ||||||||||||| ||||||||||    
T  17375153 accaaaactaccattgaccaccacaaaaaccacaattaaccctcaccaaaaagcaaca 17375210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 30 - 89
Target Start/End: Original strand, 4869507 - 4869566
Alignment:
Q  30 tcaccaaaactaccattgaccaccacaaaaatcaccattaaccctcacctaaaagcaaca 89  Q
    |||| |||||||||||||||||||||||||| ||||||||||| ||||  ||||||||||    
T  4869507 tcacaaaaactaccattgaccaccacaaaaaccaccattaaccatcactaaaaagcaaca 4869566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 170 - 243
Target Start/End: Original strand, 4869637 - 4869710
Alignment:
Q  170 ccaaaatcagtaccaccaagaaaaccaccatgaagtaccacaaactaacacaaccaaagatccatcgaaaccat 243  Q
    |||||||||| |||| || ||||||| |||||||| ||| ||||| || ||||||||||||||||| |||||||    
T  4869637 ccaaaatcagcaccatcatgaaaaccgccatgaagcaccgcaaaccaaaacaaccaaagatccatcaaaaccat 4869710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 31 - 83
Target Start/End: Complemental strand, 14950887 - 14950835
Alignment:
Q  31 caccaaaactaccattgaccaccacaaaaatcaccattaaccctcacctaaaa 83  Q
    |||||||||||||||| ||||||||||||| ||||||||| ||||||| ||||    
T  14950887 caccaaaactaccattaaccaccacaaaaaccaccattaatcctcaccaaaaa 14950835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 109; Significance: 8e-55; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 170 - 310
Target Start/End: Original strand, 20740570 - 20740710
Alignment:
Q  170 ccaaaatcagtaccaccaagaaaaccaccatgaagtaccacaaactaacacaaccaaagatccatcgaaaccatataagttcataagcgaacctagatat 269  Q
    |||||||||| ||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  20740570 ccaaaatcagcaccaccaagaaaaccaccatgaagtaccataaaccaacacaaccaaagatccatcgaaaccatataagttcataaccgaacctagatat 20740669  T
Q  270 gacccatcaccaccatcatgaccgatcaatcaccacctatg 310  Q
    || |||||||||||||| ||||| ||| |||||||||||||    
T  20740670 gatccatcaccaccatcgtgaccaatccatcaccacctatg 20740710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 170 - 307
Target Start/End: Original strand, 21881459 - 21881596
Alignment:
Q  170 ccaaaatcagtaccaccaagaaaaccaccatgaagtaccacaaactaacacaaccaaagatccatcgaaaccatataagttcataagcgaacctagatat 269  Q
    |||||||||| ||||||| || |||  |||||||| ||||||||| |||| |||||||||| |||||||||||||  |||||||||||||||||||||||    
T  21881459 ccaaaatcagcaccaccatgataactgccatgaagcaccacaaaccaacataaccaaagattcatcgaaaccatagcagttcataagcgaacctagatat 21881558  T
Q  270 gacccatcaccaccatcatgaccgatcaatcaccacct 307  Q
    || |||||||||||||| ||||||||| ||||||||||    
T  21881559 gatccatcaccaccatcgtgaccgatccatcaccacct 21881596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 28 - 93
Target Start/End: Original strand, 20740453 - 20740518
Alignment:
Q  28 catcaccaaaactaccattgaccaccacaaaaatcaccattaaccctcacctaaaagcaacatcag 93  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  20740453 catcaccaaaactaccattgaccaccacaaaaatcaccattaaccttcacctaaaagcaacatcag 20740518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 30 - 89
Target Start/End: Original strand, 21881318 - 21881377
Alignment:
Q  30 tcaccaaaactaccattgaccaccacaaaaatcaccattaaccctcacctaaaagcaaca 89  Q
    |||||||||||| |||||||||||||||||||||| ||||||||||||| ||||||||||    
T  21881318 tcaccaaaactagcattgaccaccacaaaaatcacgattaaccctcaccaaaaagcaaca 21881377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 83
Target Start/End: Complemental strand, 32747768 - 32747716
Alignment:
Q  31 caccaaaactaccattgaccaccacaaaaatcaccattaaccctcacctaaaa 83  Q
    |||||||||||||||| ||||||||||||| ||||||||  ||||||| ||||    
T  32747768 caccaaaactaccattaaccaccacaaaaaccaccattacacctcaccaaaaa 32747716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 108; Significance: 3e-54; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 167 - 310
Target Start/End: Complemental strand, 47518584 - 47518441
Alignment:
Q  167 gatccaaaatcagtaccaccaagaaaaccaccatgaagtaccacaaactaacacaaccaaagatccatcgaaaccatataagttcataagcgaacctaga 266  Q
    ||||||||||||| | |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47518584 gatccaaaatcagcaacaccaagaaaaccaccatgaagtaccacaaacgaacacaaccaaagatccatcgaaaccatataagttcataagcgaacctaga 47518485  T
Q  267 tatgacccatcaccaccatcatgaccgatcaatcaccacctatg 310  Q
    |||||  ||||||||||||  |||| |||| |||||||||||||    
T  47518484 tatgattcatcaccaccattgtgactgatccatcaccacctatg 47518441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 170 - 310
Target Start/End: Original strand, 53202258 - 53202398
Alignment:
Q  170 ccaaaatcagtaccaccaagaaaaccaccatgaagtaccacaaactaacacaaccaaagatccatcgaaaccatataagttcataagcgaacctagatat 269  Q
    |||||||||  |||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  53202258 ccaaaatcaacaccaccaagaaaaccatcatgaagtaccacaaaccaatacaaccaaagatccatcgaaaccatataagttcataagcgaatctagatat 53202357  T
Q  270 gacccatcaccaccatcatgaccgatcaatcaccacctatg 310  Q
    ||  ||||||||||||| |||||||||  ||||||||||||    
T  53202358 gattcatcaccaccatcgtgaccgatctgtcaccacctatg 53202398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 170 - 261
Target Start/End: Complemental strand, 34227148 - 34227057
Alignment:
Q  170 ccaaaatcagtaccaccaagaaaaccaccatgaagtaccacaaactaacacaaccaaagatccatcgaaaccatataagttcataagcgaac 261  Q
    |||||||||| |||||||||||| |||||||||||||||||| || ||||||||||||||||||| ||||||||||||||||||||||||||    
T  34227148 ccaaaatcagcaccaccaagaaagccaccatgaagtaccacagaccaacacaaccaaagatccattgaaaccatataagttcataagcgaac 34227057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 170 - 310
Target Start/End: Complemental strand, 23054363 - 23054224
Alignment:
Q  170 ccaaaatcagtaccaccaagaaaaccaccatgaagtaccacaaactaacacaaccaaagatccatcgaaaccatataagttcataagcgaacctagatat 269  Q
    |||||||||| ||||||| ||||||| |||| ||| ||||| ||| ||||||||||||||||||| |||||||||  |||||||||||||||| ||||||    
T  23054363 ccaaaatcagcaccaccatgaaaaccgccataaagcaccacgaaccaacacaaccaaagatccattgaaaccataacagttcataagcgaaccgagatat 23054264  T
Q  270 gacccatcaccaccatcatgaccgatcaatcaccacctatg 310  Q
    || ||| || ||||||| |||| |||| |||||||||||||    
T  23054263 gatccagca-caccatcgtgactgatccatcaccacctatg 23054224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 30 - 89
Target Start/End: Original strand, 53202118 - 53202177
Alignment:
Q  30 tcaccaaaactaccattgaccaccacaaaaatcaccattaaccctcacctaaaagcaaca 89  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53202118 tcaccaaaactaccattgaccaccacaaaaatcaccattaaccctcacctaaaagcaaca 53202177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 30 - 89
Target Start/End: Complemental strand, 47518721 - 47518662
Alignment:
Q  30 tcaccaaaactaccattgaccaccacaaaaatcaccattaaccctcacctaaaagcaaca 89  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  47518721 tcaccaaaactaccattgaccaccacaaaaatcactattaaccctcacctaaaagcaaca 47518662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 192 - 309
Target Start/End: Original strand, 6410005 - 6410122
Alignment:
Q  192 aaccaccatgaagtaccacaaactaacacaaccaaagatccatcgaaaccatataagttcataagcgaacctagatatgacccatcaccaccatcatgac 291  Q
    ||||||||||||| ||||||||| ||||||||| ||||| |||||||||||||  || ||||||||||||  |||| ||| | ||| ||||| || ||||    
T  6410005 aaccaccatgaagcaccacaaaccaacacaacccaagattcatcgaaaccataatagatcataagcgaactcagatctgatcgatcgccaccttcgtgac 6410104  T
Q  292 cgatcaatcaccacctat 309  Q
    ||||| ||||||||||||    
T  6410105 cgatccatcaccacctat 6410122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 25 - 93
Target Start/End: Complemental strand, 23054508 - 23054441
Alignment:
Q  25 catcatcaccaaaactaccattgaccaccacaaaaatcaccattaaccctcacctaaaagcaacatcag 93  Q
    |||| ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  23054508 catcgtcaccaaaactaccattgaccaccacaaaac-caccattaaccctcacctaaaagcaacatcag 23054441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 28 - 89
Target Start/End: Complemental strand, 34227265 - 34227204
Alignment:
Q  28 catcaccaaaactaccattgaccaccacaaaaatcaccattaaccctcacctaaaagcaaca 89  Q
    |||||| ||||||||||||||||| ||| |||| ||||||||||||||||||||||||||||    
T  34227265 catcactaaaactaccattgaccatcacgaaaaccaccattaaccctcacctaaaagcaaca 34227204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 175 - 240
Target Start/End: Complemental strand, 12469407 - 12469342
Alignment:
Q  175 atcagtaccaccaagaaaaccaccatgaagtaccacaaactaacacaaccaaagatccatcgaaac 240  Q
    ||||| ||||||| |  ||||||||||||| ||||||||| ||||||||||| |||||||||||||    
T  12469407 atcagcaccaccatggtaaccaccatgaaggaccacaaaccaacacaaccaaggatccatcgaaac 12469342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 31 - 83
Target Start/End: Original strand, 45873102 - 45873154
Alignment:
Q  31 caccaaaactaccattgaccaccacaaaaatcaccattaaccctcacctaaaa 83  Q
    |||||||||||||||| ||||||||||||| ||||||||| ||||||| ||||    
T  45873102 caccaaaactaccattaaccaccacaaaaaccaccattaatcctcaccaaaaa 45873154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 34 - 77
Target Start/End: Complemental strand, 12489259 - 12489216
Alignment:
Q  34 caaaactaccattgaccaccacaaaaatcaccattaaccctcac 77  Q
    ||||||||||||| ||||||||||||||||||||||||| ||||    
T  12489259 caaaactaccattaaccaccacaaaaatcaccattaaccatcac 12489216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 240
Target Start/End: Complemental strand, 12466746 - 12466698
Alignment:
Q  192 aaccaccatgaagtaccacaaactaacacaaccaaagatccatcgaaac 240  Q
    ||||||||||||| ||||||||| |||| |||||| |||||||||||||    
T  12466746 aaccaccatgaaggaccacaaaccaacataaccaaggatccatcgaaac 12466698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 83
Target Start/End: Original strand, 14441115 - 14441167
Alignment:
Q  31 caccaaaactaccattgaccaccacaaaaatcaccattaaccctcacctaaaa 83  Q
    |||||||||||||||| |||| |||||||| ||||||||| ||||||| ||||    
T  14441115 caccaaaactaccattaaccagcacaaaaaccaccattaatcctcaccaaaaa 14441167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 83
Target Start/End: Original strand, 12130516 - 12130566
Alignment:
Q  33 ccaaaactaccattgaccaccacaaaaatcaccattaaccctcacctaaaa 83  Q
    ||||||||||||||||||||||||||||  | |||||| ||||||| ||||    
T  12130516 ccaaaactaccattgaccaccacaaaaactatcattaatcctcaccaaaaa 12130566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 83
Target Start/End: Original strand, 38093215 - 38093267
Alignment:
Q  31 caccaaaactaccattgaccaccacaaaaatcaccattaaccctcacctaaaa 83  Q
    |||||||||||||| | ||||||||||||| |||||| || ||||||| ||||    
T  38093215 caccaaaactaccaataaccaccacaaaaaacaccataaatcctcaccaaaaa 38093267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 83
Target Start/End: Original strand, 55728692 - 55728744
Alignment:
Q  31 caccaaaactaccattgaccaccacaaaaatcaccattaaccctcacctaaaa 83  Q
    |||||||| || |||| ||||||||||||| ||||||||| ||||||| ||||    
T  55728692 caccaaaattatcattaaccaccacaaaaaccaccattaatcctcaccaaaaa 55728744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 84; Significance: 7e-40; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 167 - 310
Target Start/End: Original strand, 18696922 - 18697065
Alignment:
Q  167 gatccaaaatcagtaccaccaagaaaaccaccatgaagtaccacaaactaacacaaccaaagatccatcgaaaccatataagttcataagcgaacctaga 266  Q
    ||||||||||||| | ||||| ||||| | |||||||| ||||||||| |||||||||||||||||| |||| |||||  ||||||||||||||||||||    
T  18696922 gatccaaaatcagcaacaccatgaaaaacgccatgaagcaccacaaaccaacacaaccaaagatccaccgaacccataacagttcataagcgaacctaga 18697021  T
Q  267 tatgacccatcaccaccatcatgaccgatcaatcaccacctatg 310  Q
    ||||| |||||||||||||| |||| |||| |||||||||||||    
T  18697022 tatgatccatcaccaccatcgtgactgatccatcaccacctatg 18697065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 170 - 310
Target Start/End: Complemental strand, 7767135 - 7766995
Alignment:
Q  170 ccaaaatcagtaccaccaagaaaaccaccatgaagtaccacaaactaacacaaccaaagatccatcgaaaccatataagttcataagcgaacctagatat 269  Q
    |||||||||  ||||||| |||| || |||||||| ||||||||| |||||||||||||||||||||||||||||  | |||||||| ||||||||||||    
T  7767135 ccaaaatcaacaccaccatgaaacccgccatgaagcaccacaaaccaacacaaccaaagatccatcgaaaccataacaattcataagtgaacctagatat 7767036  T
Q  270 gacccatcaccaccatcatgaccgatcaatcaccacctatg 310  Q
    || |||||||||||||  || ||||||||||||||||||||    
T  7767035 gatccatcaccaccattgtggccgatcaatcaccacctatg 7766995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 193 - 280
Target Start/End: Complemental strand, 41355630 - 41355543
Alignment:
Q  193 accaccatgaagtaccacaaactaacacaaccaaagatccatcgaaaccatataagttcataagcgaacctagatatgacccatcacc 280  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| ||||||||    
T  41355630 accaccatgaagtaccacaaaccaacacaaccaaagatccatcgaaaccatataagttcatgagcgaacatagatatgatccatcacc 41355543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 170 - 305
Target Start/End: Complemental strand, 27170219 - 27170084
Alignment:
Q  170 ccaaaatcagtaccaccaagaaaaccaccatgaagtaccacaaactaacacaaccaaagatccatcgaaaccatataagttcataagcgaacctagatat 269  Q
    ||||||| || ||||||| ||||||| |||||||| ||||||||| |||||||||||||||||||||||||||||  ||||| ||||  || | | ||||    
T  27170219 ccaaaattagcaccaccatgaaaaccgccatgaagcaccacaaaccaacacaaccaaagatccatcgaaaccataacagttcgtaagtaaagccaaatat 27170120  T
Q  270 gacccatcaccaccatcatgaccgatcaatcaccac 305  Q
    || |||| ||||||||| ||||||||| ||||||||    
T  27170119 gatccattaccaccatcgtgaccgatccatcaccac 27170084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 30 - 93
Target Start/End: Complemental strand, 38958442 - 38958379
Alignment:
Q  30 tcaccaaaactaccattgaccaccacaaaaatcaccattaaccctcacctaaaagcaacatcag 93  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  38958442 tcaccaaaactaccattgaccaccacaaaaatcaccattaaccctcacctaaaagcaacgtcag 38958379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 34 - 89
Target Start/End: Complemental strand, 41355777 - 41355722
Alignment:
Q  34 caaaactaccattgaccaccacaaaaatcaccattaaccctcacctaaaagcaaca 89  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41355777 caaaactaccattgaccaccacaaaaatcaccattaaccctcacctaaaagcaaca 41355722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 170 - 241
Target Start/End: Complemental strand, 38958301 - 38958230
Alignment:
Q  170 ccaaaatcagtaccaccaagaaaaccaccatgaagtaccacaaactaacacaaccaaagatccatcgaaacc 241  Q
    |||||||||| |||| ||| ||||||||||||||||| ||||||| ||||||||||||||||||||||||||    
T  38958301 ccaaaatcagcaccatcaaaaaaaccaccatgaagtatcacaaaccaacacaaccaaagatccatcgaaacc 38958230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 170 - 236
Target Start/End: Original strand, 7271826 - 7271892
Alignment:
Q  170 ccaaaatcagtaccaccaagaaaaccaccatgaagtaccacaaactaacacaaccaaagatccatcg 236  Q
    |||||||||| ||||||| ||||||| |||||||| ||||||||| |||||||||||||||||||||    
T  7271826 ccaaaatcagcaccaccatgaaaaccgccatgaagcaccacaaaccaacacaaccaaagatccatcg 7271892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 170 - 243
Target Start/End: Complemental strand, 6030461 - 6030388
Alignment:
Q  170 ccaaaatcagtaccaccaagaaaaccaccatgaagtaccacaaactaacacaaccaaagatccatcgaaaccat 243  Q
    |||||||||| ||||||| |||||||  || |||| ||||||||| ||||||||||||||||||||||||||||    
T  6030461 ccaaaatcagcaccaccatgaaaaccgtcaggaagcaccacaaaccaacacaaccaaagatccatcgaaaccat 6030388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 30 - 89
Target Start/End: Original strand, 7271708 - 7271767
Alignment:
Q  30 tcaccaaaactaccattgaccaccacaaaaatcaccattaaccctcacctaaaagcaaca 89  Q
    ||||||||| ||||||||||||||||||||| ||||||||||| ||||  ||||||||||    
T  7271708 tcaccaaaagtaccattgaccaccacaaaaaccaccattaaccatcactaaaaagcaaca 7271767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 35 - 89
Target Start/End: Complemental strand, 27170329 - 27170275
Alignment:
Q  35 aaaactaccattgaccaccacaaaaatcaccattaaccctcacctaaaagcaaca 89  Q
    |||||||||||| ||||||||||||| ||||||||| ||||||| ||||||||||    
T  27170329 aaaactaccattaaccaccacaaaaaccaccattaatcctcaccaaaaagcaaca 27170275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 31 - 83
Target Start/End: Complemental strand, 26331269 - 26331217
Alignment:
Q  31 caccaaaactaccattgaccaccacaaaaatcaccattaaccctcacctaaaa 83  Q
    |||||||||||||||| ||||||||||||| ||||||||| ||||||| ||||    
T  26331269 caccaaaactaccattaaccaccacaaaaaccaccattaatcctcaccaaaaa 26331217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 89
Target Start/End: Original strand, 26656630 - 26656688
Alignment:
Q  30 tcaccaaaactaccattgaccaccacaaaaatcaccattaaccctcacctaaaagcaaca 89  Q
    |||||||||||||||||||||||||| |||| ||||||||||| ||||  ||||||||||    
T  26656630 tcaccaaaactaccattgaccaccac-aaaaccaccattaaccatcactaaaaagcaaca 26656688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 89
Target Start/End: Original strand, 26928217 - 26928275
Alignment:
Q  30 tcaccaaaactaccattgaccaccacaaaaatcaccattaaccctcacctaaaagcaaca 89  Q
    |||||||||||||||||||||||||| |||| ||||||||||| ||||  ||||||||||    
T  26928217 tcaccaaaactaccattgaccaccac-aaaaccaccattaaccatcactaaaaagcaaca 26928275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 34 - 89
Target Start/End: Complemental strand, 40600040 - 40599985
Alignment:
Q  34 caaaactaccattgaccaccacaaaaatcaccattaaccctcacctaaaagcaaca 89  Q
    ||||||||||||| ||||||||||||| ||||||||| ||||||| |||| |||||    
T  40600040 caaaactaccattaaccaccacaaaaaccaccattaatcctcaccaaaaatcaaca 40599985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 31 - 69
Target Start/End: Original strand, 42221388 - 42221426
Alignment:
Q  31 caccaaaactaccattgaccaccacaaaaatcaccatta 69  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  42221388 caccaaaactaccattaaccaccacaaaaatcaccatta 42221426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 34 - 89
Target Start/End: Complemental strand, 7767255 - 7767203
Alignment:
Q  34 caaaactaccattgaccaccacaaaaatcaccattaaccctcacctaaaagcaaca 89  Q
    |||||||| |||||||||||||||||| ||||   |||||||||||||||||||||    
T  7767255 caaaactatcattgaccaccacaaaaaccacc---aaccctcacctaaaagcaaca 7767203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 83
Target Start/End: Complemental strand, 24867257 - 24867205
Alignment:
Q  31 caccaaaactaccattgaccaccacaaaaatcaccattaaccctcacctaaaa 83  Q
    |||||||||||||||| |||| |||||||| ||||||||| ||||||| ||||    
T  24867257 caccaaaactaccattaaccaacacaaaaaccaccattaatcctcaccaaaaa 24867205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 243
Target Start/End: Original strand, 26656780 - 26656830
Alignment:
Q  193 accaccatgaagtaccacaaactaacacaaccaaagatccatcgaaaccat 243  Q
    |||||||||||| |||| |||| || |||||||||||||| ||||||||||    
T  26656780 accaccatgaagcaccataaaccaatacaaccaaagatccgtcgaaaccat 26656830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 193 - 243
Target Start/End: Original strand, 26928367 - 26928417
Alignment:
Q  193 accaccatgaagtaccacaaactaacacaaccaaagatccatcgaaaccat 243  Q
    |||||||||||| |||| |||| || |||||||||||||| ||||||||||    
T  26928367 accaccatgaagcaccataaaccaatacaaccaaagatccgtcgaaaccat 26928417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 80; Significance: 2e-37; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 167 - 310
Target Start/End: Original strand, 10408814 - 10408957
Alignment:
Q  167 gatccaaaatcagtaccaccaagaaaaccaccatgaagtaccacaaactaacacaaccaaagatccatcgaaaccatataagttcataagcgaacctaga 266  Q
    |||||||||| || |||||||  |||||| |||||||| ||||||||| ||||||||||||||| |||||||||||||  |  |||||||||||||||||    
T  10408814 gatccaaaattagcaccaccattaaaacctccatgaagcaccacaaaccaacacaaccaaagattcatcgaaaccataacatatcataagcgaacctaga 10408913  T
Q  267 tatgacccatcaccaccatcatgaccgatcaatcaccacctatg 310  Q
    ||||| |||||||||||||| |||||| || |||||||||||||    
T  10408914 tatgatccatcaccaccatcgtgaccgttccatcaccacctatg 10408957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 170 - 296
Target Start/End: Original strand, 5994622 - 5994748
Alignment:
Q  170 ccaaaatcagtaccaccaagaaaaccaccatgaagtaccacaaactaacacaaccaaagatccatcgaaaccatataagttcataagcgaacctagatat 269  Q
    |||||||||  | ||||| ||| ||| |||||||| ||||||||| |||||||||||||||||||| ||||||||  |||||||||||||||| ||||||    
T  5994622 ccaaaatcaacatcaccatgaataccgccatgaagcaccacaaaccaacacaaccaaagatccatcaaaaccataacagttcataagcgaacccagatat 5994721  T
Q  270 gacccatcaccaccatcatgaccgatc 296  Q
    || |||||||||||||||||| |||||    
T  5994722 gatccatcaccaccatcatgatcgatc 5994748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 170 - 308
Target Start/End: Original strand, 6444027 - 6444165
Alignment:
Q  170 ccaaaatcagtaccaccaagaaaaccaccatgaagtaccacaaactaacacaaccaaagatccatcgaaaccatataagttcataagcgaacctagatat 269  Q
    ||||||||||  |||||| ||||||||||| |||||||||||||| ||||||| ||||||| | |||||||||||  || ||||| ||||||  | || |    
T  6444027 ccaaaatcagccccaccatgaaaaccaccacgaagtaccacaaaccaacacaatcaaagattcttcgaaaccataacagctcataggcgaactcatatct 6444126  T
Q  270 gacccatcaccaccatcatgaccgatcaatcaccaccta 308  Q
    || ||||||||||| |  ||||| ||| || ||||||||    
T  6444127 gatccatcaccacctttgtgaccaatccataaccaccta 6444165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 31 - 83
Target Start/End: Original strand, 5994485 - 5994537
Alignment:
Q  31 caccaaaactaccattgaccaccacaaaaatcaccattaaccctcacctaaaa 83  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||| ||||    
T  5994485 caccaaaactaccattaaccaccacaaaaatcaccattaaccctcaccaaaaa 5994537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 30 - 89
Target Start/End: Original strand, 10408702 - 10408761
Alignment:
Q  30 tcaccaaaactaccattgaccaccacaaaaatcaccattaaccctcacctaaaagcaaca 89  Q
    |||| ||||| |||||||||||||||||||| |||||||||| |||||||||||||||||    
T  10408702 tcactaaaacaaccattgaccaccacaaaaaccaccattaactctcacctaaaagcaaca 10408761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 83
Target Start/End: Complemental strand, 15050214 - 15050162
Alignment:
Q  31 caccaaaactaccattgaccaccacaaaaatcaccattaaccctcacctaaaa 83  Q
    |||||||||||||||| ||||||||||||| || |||||| ||||||| ||||    
T  15050214 caccaaaactaccattaaccaccacaaaaaccatcattaatcctcaccaaaaa 15050162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 78
Target Start/End: Complemental strand, 3763089 - 3763045
Alignment:
Q  34 caaaactaccattgaccaccacaaaaatcaccattaaccctcacc 78  Q
    ||||||||||||| ||||||||||||| || |||||| |||||||    
T  3763089 caaaactaccattaaccaccacaaaaaccatcattaatcctcacc 3763045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 83
Target Start/End: Original strand, 25142902 - 25142954
Alignment:
Q  31 caccaaaactaccattgaccaccacaaaaatcaccattaaccctcacctaaaa 83  Q
    ||||| |||||||||| ||||||||||||||||||| ||  ||||||| ||||    
T  25142902 caccacaactaccattaaccaccacaaaaatcaccactactcctcaccgaaaa 25142954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 70; Significance: 1e-31; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 197 - 310
Target Start/End: Original strand, 34117991 - 34118104
Alignment:
Q  197 ccatgaagtaccacaaactaacacaaccaaagatccatcgaaaccatataagttcataagcgaacctagatatgacccatcaccaccatcatgaccgatc 296  Q
    |||||| | ||||||||  ||||||||||||||||||  |||||||||  ||||||||||||||||||||||||| |||||||||||||| |||||||||    
T  34117991 ccatgaggcaccacaaatcaacacaaccaaagatccactgaaaccataacagttcataagcgaacctagatatgatccatcaccaccatcgtgaccgatc 34118090  T
Q  297 aatcaccacctatg 310  Q
     |||||||||||||    
T  34118091 catcaccacctatg 34118104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 167 - 283
Target Start/End: Original strand, 34654967 - 34655083
Alignment:
Q  167 gatccaaaatcagtaccaccaagaaaaccaccatgaagtaccacaaactaacacaaccaaagatccatcgaaaccatataagttcataagcgaacctaga 266  Q
    ||||||||||||| ||||||| ||||||| |||||||| ||||||||| ||||||| ||||||| |||| ||||||||  | ||||||||||||||||||    
T  34654967 gatccaaaatcagcaccaccatgaaaaccgccatgaagcaccacaaaccaacacaatcaaagatgcatcaaaaccataacatttcataagcgaacctaga 34655066  T
Q  267 tatgacccatcaccacc 283  Q
    ||||| |||||||||||    
T  34655067 tatgatccatcaccacc 34655083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 30 - 89
Target Start/End: Original strand, 34654830 - 34654889
Alignment:
Q  30 tcaccaaaactaccattgaccaccacaaaaatcaccattaaccctcacctaaaagcaaca 89  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34654830 tcaccaaaactaccattgaccaccacaaaaatcaccattaaccctcacctaaaagcaaca 34654889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 171 - 281
Target Start/End: Complemental strand, 26236781 - 26236671
Alignment:
Q  171 caaaatcagtaccaccaagaaaaccaccatgaagtaccacaaactaacacaaccaaagatccatcgaaaccatataagttcataagcgaacctagatatg 270  Q
    ||||||||| |||| || |||||||||||||||| ||||||||| ||| ||||||||||||||||||| |||||  || ||||||| ||||| |||| ||    
T  26236781 caaaatcagcaccatcatgaaaaccaccatgaagcaccacaaaccaacgcaaccaaagatccatcgaacccataacaggtcataagtgaacccagatctg 26236682  T
Q  271 acccatcacca 281  Q
    | |||||||||    
T  26236681 atccatcacca 26236671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 193 - 283
Target Start/End: Complemental strand, 39709105 - 39709015
Alignment:
Q  193 accaccatgaagtaccacaaactaacacaaccaaagatccatcgaaaccatataagttcataagcgaacctagatatgacccatcaccacc 283  Q
    |||||||||||| ||||||||| |||||||||||||||||||| ||||||||  ||||| |||||||||| ||||| || |||||||||||    
T  39709105 accaccatgaagcaccacaaaccaacacaaccaaagatccatcaaaaccataacagttcctaagcgaacccagatacgatccatcaccacc 39709015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 170 - 243
Target Start/End: Original strand, 615753 - 615826
Alignment:
Q  170 ccaaaatcagtaccaccaagaaaaccaccatgaagtaccacaaactaacacaaccaaagatccatcgaaaccat 243  Q
    ||||| |||| ||||||| |||||||  ||||||| |||||||||||||||||||||||||||||| |||||||    
T  615753 ccaaattcagcaccaccatgaaaaccgtcatgaagcaccacaaactaacacaaccaaagatccatcaaaaccat 615826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 30 - 93
Target Start/End: Complemental strand, 39709243 - 39709180
Alignment:
Q  30 tcaccaaaactaccattgaccaccacaaaaatcaccattaaccctcacctaaaagcaacatcag 93  Q
    |||| |||||||||||| ||||||||||||||||||||||||||||||| ||||| || |||||    
T  39709243 tcacgaaaactaccattaaccaccacaaaaatcaccattaaccctcaccaaaaagaaatatcag 39709180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 193 - 310
Target Start/End: Complemental strand, 11408092 - 11407975
Alignment:
Q  193 accaccatgaagtaccacaaactaacacaaccaaagatccatcgaaaccatataagttcataagcgaacctagatatgacccatcaccaccatcatgacc 292  Q
    |||||||||||| ||||||||| |||||||||||||||   |||||||||||  |  |||||||| |||| | || ||| ||||||||||| || || ||    
T  11408092 accaccatgaagcaccacaaaccaacacaaccaaagatttgtcgaaaccataacatatcataagctaacccatatctgatccatcaccaccttcgtggcc 11407993  T
Q  293 gatcaatcaccacctatg 310  Q
    |||| |||||||| ||||    
T  11407992 gatccatcaccacttatg 11407975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 28 - 88
Target Start/End: Original strand, 34117896 - 34117955
Alignment:
Q  28 catcaccaaaactaccattgaccaccacaaaaatcaccattaaccctcacctaaaagcaac 88  Q
    ||||||||||||||||||||||| | ||||||| ||||||||||||||||| |||||||||    
T  34117896 catcaccaaaactaccattgaccgctacaaaaaccaccattaaccctcacc-aaaagcaac 34117955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 89
Target Start/End: Original strand, 615638 - 615691
Alignment:
Q  36 aaactaccattgaccaccacaaaaatcaccattaaccctcacctaaaagcaaca 89  Q
    ||||||||||||||| ||||||||  ||||||||||| ||||  ||||||||||    
T  615638 aaactaccattgaccgccacaaaaggcaccattaaccatcactaaaaagcaaca 615691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 83
Target Start/End: Original strand, 11814695 - 11814744
Alignment:
Q  34 caaaactaccattgaccaccacaaaaatcaccattaaccctcacctaaaa 83  Q
    ||||||||||||| |||| |||||||| ||||||||| ||||||| ||||    
T  11814695 caaaactaccattaaccatcacaaaaaccaccattaatcctcaccaaaaa 11814744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 35 - 83
Target Start/End: Complemental strand, 2077531 - 2077483
Alignment:
Q  35 aaaactaccattgaccaccacaaaaatcaccattaaccctcacctaaaa 83  Q
    ||||||| |||| ||||||||||||| ||||||||| ||||||| ||||    
T  2077531 aaaactatcattaaccaccacaaaaaccaccattaatcctcaccaaaaa 2077483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 83
Target Start/End: Complemental strand, 14351226 - 14351174
Alignment:
Q  31 caccaaaactaccattgaccaccacaaaaatcaccattaaccctcacctaaaa 83  Q
    |||||||||||||| | ||||||||||||| |||||||||  |||||| ||||    
T  14351226 caccaaaactaccactaaccaccacaaaaaccaccattaattctcaccaaaaa 14351174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 30 - 89
Target Start/End: Complemental strand, 11698613 - 11698554
Alignment:
Q  30 tcaccaaaactaccattgaccaccacaaaaatcaccattaaccctcacctaaaagcaaca 89  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11698613 tcaccaaaactaccattgaccaccacaaaaatcaccattaaccctcacctaaaagcaaca 11698554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 170 - 310
Target Start/End: Original strand, 3302567 - 3302707
Alignment:
Q  170 ccaaaatcagtaccaccaagaaaaccaccatgaagtaccacaaactaacacaaccaaagatccatcgaaaccatataagttcataagcgaacctagatat 269  Q
    |||||||||  ||||||| ||||||   ||||||| |||||| || || |||||||||||||||||||||| |||  |||| ||||||||| ||||||||    
T  3302567 ccaaaatcaacaccaccatgaaaactgtcatgaagcaccacataccaatacaaccaaagatccatcgaaactataacagttaataagcgaatctagatat 3302666  T
Q  270 gacccatcaccaccatcatgaccgatcaatcaccacctatg 310  Q
    ||   |||||||||||| ||| ||||| |||||||||||||    
T  3302667 gatgtatcaccaccatcgtgatcgatctatcaccacctatg 3302707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 30 - 89
Target Start/End: Original strand, 3302427 - 3302486
Alignment:
Q  30 tcaccaaaactaccattgaccaccacaaaaatcaccattaaccctcacctaaaagcaaca 89  Q
    ||||||||||||||||||||||||||||||| |||||||||| |||||| ||||||||||    
T  3302427 tcaccaaaactaccattgaccaccacaaaaaccaccattaacactcaccaaaaagcaaca 3302486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 83
Target Start/End: Original strand, 31039000 - 31039052
Alignment:
Q  31 caccaaaactaccattgaccaccacaaaaatcaccattaaccctcacctaaaa 83  Q
    |||||||||||||||| ||||||||||||| ||||||||  ||||||| ||||    
T  31039000 caccaaaactaccattaaccaccacaaaaaccaccattactcctcaccgaaaa 31039052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 5e-22; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 170 - 243
Target Start/End: Complemental strand, 18269836 - 18269763
Alignment:
Q  170 ccaaaatcagtaccaccaagaaaaccaccatgaagtaccacaaactaacacaaccaaagatccatcgaaaccat 243  Q
    |||||||||  ||||||| |||||||||||||||| ||||||||| ||||||||||||||||||||||||||||    
T  18269836 ccaaaatcaacaccaccatgaaaaccaccatgaagcaccacaaaccaacacaaccaaagatccatcgaaaccat 18269763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 30 - 89
Target Start/End: Original strand, 43275830 - 43275890
Alignment:
Q  30 tcaccaaaactaccattgaccaccac-aaaaatcaccattaaccctcacctaaaagcaaca 89  Q
    |||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||    
T  43275830 tcaccaaaactaccattgaccaccacaaaaaaccaccattaaccctcaccaaaaagcaaca 43275890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 25 - 77
Target Start/End: Complemental strand, 18269971 - 18269919
Alignment:
Q  25 catcatcaccaaaactaccattgaccaccacaaaaatcaccattaaccctcac 77  Q
    |||| ||||||||||| ||||||||||||||||||| ||||||||||| ||||    
T  18269971 catcgtcaccaaaacttccattgaccaccacaaaaaccaccattaaccatcac 18269919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 34 - 83
Target Start/End: Original strand, 31699221 - 31699270
Alignment:
Q  34 caaaactaccattgaccaccacaaaaatcaccattaaccctcacctaaaa 83  Q
    ||||||||||||| ||||||||||||| ||||||||| ||||||| ||||    
T  31699221 caaaactaccattaaccaccacaaaaaccaccattaatcctcaccaaaaa 31699270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 198 - 244
Target Start/End: Original strand, 43275999 - 43276045
Alignment:
Q  198 catgaagtaccacaaactaacacaaccaaagatccatcgaaaccata 244  Q
    ||||||| ||||||||| ||||||||||||||| |||||||| ||||    
T  43275999 catgaagcaccacaaaccaacacaaccaaagattcatcgaaatcata 43276045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0157 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 34 - 77
Target Start/End: Original strand, 31218 - 31261
Alignment:
Q  34 caaaactaccattgaccaccacaaaaatcaccattaaccctcac 77  Q
    ||||||||||||| ||||||||||||||||||||||||| ||||    
T  31218 caaaactaccattaaccaccacaaaaatcaccattaaccatcac 31261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 83
Target Start/End: Original strand, 2938 - 2989
Alignment:
Q  31 caccaaaactaccattgaccaccacaaaaatcaccattaaccctcacctaaaa 83  Q
    |||||||||||||||| |||||||| |||||||||||||  ||||||| ||||    
T  2938 caccaaaactaccattaaccaccac-aaaatcaccattactcctcaccaaaaa 2989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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