View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20551_high_6 (Length: 360)

Name: NF20551_high_6
Description: NF20551
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20551_high_6
NF20551_high_6
[»] chr1 (9 HSPs)
chr1 (172-355)||(39708913-39709095)
chr1 (187-355)||(34655003-34655171)
chr1 (216-284)||(615823-615891)
chr1 (182-288)||(34118086-34118195)
chr1 (224-355)||(26236618-26236749)
chr1 (228-288)||(11407932-11407993)
chr1 (28-81)||(39708808-39708863)
chr1 (315-355)||(615786-615826)
chr1 (274-354)||(34117998-34118077)
[»] chr2 (14 HSPs)
chr2 (184-288)||(17375391-17375496)
chr2 (182-288)||(1895524-1895631)
chr2 (187-287)||(17281850-17281951)
chr2 (235-352)||(3921620-3921736)
chr2 (193-287)||(1551510-1551605)
chr2 (186-284)||(4869707-4869803)
chr2 (274-355)||(17375302-17375382)
chr2 (315-355)||(34660311-34660351)
chr2 (274-345)||(17281961-17282031)
chr2 (314-352)||(1895438-1895476)
chr2 (182-249)||(34660352-34660417)
chr2 (311-353)||(38531244-38531286)
chr2 (228-288)||(38531147-38531208)
chr2 (315-355)||(4869670-4869710)
[»] chr4 (7 HSPs)
chr4 (182-281)||(53202387-53202487)
chr4 (182-287)||(23054135-23054241)
chr4 (182-287)||(47518352-47518458)
chr4 (230-288)||(6410105-6410164)
chr4 (246-288)||(24957572-24957614)
chr4 (298-355)||(23054273-23054330)
chr4 (314-352)||(34227074-34227112)
[»] chr5 (13 HSPs)
chr5 (182-288)||(7766906-7767013)
chr5 (217-352)||(41355483-41355617)
chr5 (182-283)||(7271893-7271992)
chr5 (190-288)||(27169997-27170097)
chr5 (178-287)||(18697048-18697160)
chr5 (216-284)||(6030323-6030391)
chr5 (216-284)||(26656827-26656895)
chr5 (216-284)||(26928414-26928482)
chr5 (274-355)||(7767022-7767102)
chr5 (274-355)||(18696958-18697038)
chr5 (302-355)||(27170133-27170186)
chr5 (315-355)||(6030388-6030428)
chr5 (323-355)||(7271859-7271891)
[»] chr6 (3 HSPs)
chr6 (193-286)||(20740694-20740788)
chr6 (182-288)||(21881581-21881688)
chr6 (311-355)||(30845582-30845626)
[»] chr7 (2 HSPs)
chr7 (188-288)||(3302689-3302790)
chr7 (298-355)||(3302600-3302657)
[»] chr8 (5 HSPs)
chr8 (182-285)||(10408942-10409046)
chr8 (274-355)||(5994655-5994735)
chr8 (187-274)||(5994757-5994846)
chr8 (230-286)||(6444151-6444208)
chr8 (274-355)||(10408850-10408930)
[»] chr3 (3 HSPs)
chr3 (315-355)||(18269763-18269803)
chr3 (226-284)||(18269708-18269766)
chr3 (311-355)||(43276004-43276048)


Alignment Details
Target: chr1 (Bit Score: 152; Significance: 2e-80; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 172 - 355
Target Start/End: Original strand, 39708913 - 39709095
Alignment:
Q  172 ttgttagatacttgtcggtggttgtttggttttctgggtctcgaactatttgattcgttttctctcttggttgtggtggaggttatgtttgctcacaaca 271  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |    
T  39708913 ttgttagatgcttgtcggtggttgtttggttttctgggtctcgaactatttgattcgttttctctcttggttgtggtggaggttatgtttgctcgcaata 39709012  T
Q  272 taggtggtgatggatcgtctctgggtttcgcttaggaattgttatggttttgatggatctttggttgtgttggtctgtggtgct 355  Q
    |||||||||||||||||| |||||| |||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||    
T  39709013 taggtggtgatggatcgtatctggg-ttcgcttaggaactgttatggttttgatggatctttggttgtgttggtttgtggtgct 39709095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 187 - 355
Target Start/End: Complemental strand, 34655171 - 34655003
Alignment:
Q  187 cggtggttgtttggttttc-tgggtctcgaactatttgattcgttttctctcttggttgtggtggaggttatgtttgctcacaacataggtggtgatgga 285  Q
    ||||| ||||||||||||| ||||||||  ||||||||||| ||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||    
T  34655171 cggtgtttgtttggttttcgtgggtctcagactatttgatttgttttctcttttggttgtggtggaggttatgtttgctcgcaacataggtggtgatgga 34655072  T
Q  286 tcgtctctgggtttcgcttaggaattgttatggttttgatggatctttggttgtgttggtctgtggtgct 355  Q
    || | ||| || |||||||| ||| |||||||||||||||| ||||||| |||||||||| |||||||||    
T  34655071 tcatatctagg-ttcgcttatgaaatgttatggttttgatgcatctttgattgtgttggtttgtggtgct 34655003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 216 - 284
Target Start/End: Complemental strand, 615891 - 615823
Alignment:
Q  216 actatttgattcgttttctctcttggttgtggtggaggttatgtttgctcacaacataggtggtgatgg 284  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||| || ||||||||||||||||||    
T  615891 actatttgattcgttttctctcttggttgtggtggagattatgtttgatcgcaacataggtggtgatgg 615823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 182 - 288
Target Start/End: Complemental strand, 34118195 - 34118086
Alignment:
Q  182 cttgtcggtggttgtttggttttc-tgggtctcgaactatttgattcgttttctctcttggttgtg--gtggaggttatgtttgctcacaacataggtgg 278  Q
    |||| |||||||||||| |||||| ||| ||||  | ||||||||| ||||||||| |||||||||  || |||||||||||||||| ||||||||||||    
T  34118195 cttgccggtggttgtttagttttcgtggatctcagattatttgatttgttttctctattggttgtgtggtagaggttatgtttgctcgcaacataggtgg 34118096  T
Q  279 tgatggatcg 288  Q
    ||||||||||    
T  34118095 tgatggatcg 34118086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 224 - 355
Target Start/End: Original strand, 26236618 - 26236749
Alignment:
Q  224 attcgttttctctcttggttgtgg-tggaggttatgtttgctcacaacataggtggtgatggatcgtctctgggtttcgcttaggaattgttatggtttt 322  Q
    ||||||||||||||| ||| |||| |||||||||||||| |||  ||||||| ||||||||||||   |||||||| | |||| ||  |||||||| ||     
T  26236618 attcgttttctctctcggtggtggatggaggttatgtttactcgaaacatagatggtgatggatcagatctgggtt-cacttatgacctgttatgggttc 26236716  T
Q  323 gatggatctttggttgtgttggtctgtggtgct 355  Q
    |||||||||||||||| |||||| |||||||||    
T  26236717 gatggatctttggttgcgttggtttgtggtgct 26236749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 228 - 288
Target Start/End: Original strand, 11407932 - 11407993
Alignment:
Q  228 gttttctctcttggttgtgg-tggaggttatgtttgctcacaacataggtggtgatggatcg 288  Q
    ||||||||||||||| |||| |||||||||||||||||| ||||||| ||||||||||||||    
T  11407932 gttttctctcttggtggtgggtggaggttatgtttgctcgcaacataagtggtgatggatcg 11407993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 28 - 81
Target Start/End: Original strand, 39708808 - 39708863
Alignment:
Q  28 cactagtggtgaaggagcgt--tgttgtcgtcgtgaaggttgatttgtatttttgg 81  Q
    |||| |||||||||||||||  ||||||||||||||||||||||||||||||||||    
T  39708808 cactggtggtgaaggagcgtgttgttgtcgtcgtgaaggttgatttgtatttttgg 39708863  T

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Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 315 - 355
Target Start/End: Complemental strand, 615826 - 615786
Alignment:
Q  315 atggttttgatggatctttggttgtgttggtctgtggtgct 355  Q
    |||||||||||||||||||||||||||| || |||||||||    
T  615826 atggttttgatggatctttggttgtgttagtttgtggtgct 615786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 274 - 354
Target Start/End: Complemental strand, 34118077 - 34117998
Alignment:
Q  274 ggtggtgatggatcgtctctgggtttcgcttaggaattgttatggttttgatggatctttggttgtgttggtctgtggtgc 354  Q
    |||||||||||||| | ||| |||| |||||| ||| |||||||||||   ||||||||||||||||||| | ||||||||    
T  34118077 ggtggtgatggatcatatctaggtt-cgcttatgaactgttatggtttcagtggatctttggttgtgttgatttgtggtgc 34117998  T

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Target: chr2 (Bit Score: 82; Significance: 1e-38; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 184 - 288
Target Start/End: Complemental strand, 17375496 - 17375391
Alignment:
Q  184 tgtcggtggttgtttggttttc-tgggtctcgaactatttgattcgttttctctcttggttgtggtggaggttatgtttgctcacaacataggtggtgat 282  Q
    |||||||||||||||||||||| ||| ||||  ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  17375496 tgtcggtggttgtttggttttcgtggctctcacactatttgattcgttttctctattggttgtggtggaggttatgtttgctcacaacataggtggtgat 17375397  T
Q  283 ggatcg 288  Q
    ||||||    
T  17375396 ggatcg 17375391  T

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Target: chr2; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 182 - 288
Target Start/End: Complemental strand, 1895631 - 1895524
Alignment:
Q  182 cttgtcggtggttgtttggttttc-tgggtctcgaactatttgattcgttttctctcttggttgtggtggaggttatgtttgctcacaacataggtggtg 280  Q
    |||||||||||||||||||||||  ||||||||  |||||||||||  ||||||||||||||||||||||||||||||| ||||| ||||||||||||||    
T  1895631 cttgtcggtggttgtttggtttttgtgggtctcagactatttgatttcttttctctcttggttgtggtggaggttatgtctgctcgcaacataggtggtg 1895532  T
Q  281 atggatcg 288  Q
    || |||||    
T  1895531 attgatcg 1895524  T

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Target: chr2; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 187 - 287
Target Start/End: Original strand, 17281850 - 17281951
Alignment:
Q  187 cggtggttgtttggttttc-tgggtctcgaactatttgattcgttttctctcttggttgtggtggaggttatgtttgctcacaacataggtggtgatgga 285  Q
    ||||||||||||| ||||| | ||||||  ||||||||||| ||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||    
T  17281850 cggtggttgtttgtttttcgtaggtctcagactatttgatttgttttctctcttggtagtggtggaggttatgtttgctcgcaacataggtggtgatgga 17281949  T
Q  286 tc 287  Q
    ||    
T  17281950 tc 17281951  T

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Target: chr2; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 235 - 352
Target Start/End: Complemental strand, 3921736 - 3921620
Alignment:
Q  235 ctcttggttgtggtggaggttatgtttgctcacaacataggtggtgatggatcgtctctgggtttcgcttaggaattgttatggttttgatggatctttg 334  Q
    ||||||||||||||||| ||||||||||||| ||||||||||||||||||||| | |||  | |||||||| ||| |  |||||||||||||||| ||||    
T  3921736 ctcttggttgtggtggatgttatgtttgctcgcaacataggtggtgatggatcatatctaag-ttcgcttatgaacttatatggttttgatggatgtttg 3921638  T
Q  335 gttgtgttggtctgtggt 352  Q
    ||||||||||| ||||||    
T  3921637 gttgtgttggtttgtggt 3921620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 193 - 287
Target Start/End: Original strand, 1551510 - 1551605
Alignment:
Q  193 ttgtttggttttc-tgggtctcgaactatttgattcgttttctctcttggttgtggtggaggttatgtttgctcacaacataggtggtgatggatc 287  Q
    ||||||| ||||| ||||||||  ||||||||||| ||||||||| |||||||||||||| ||||||||||||| |||||||||||||||||||||    
T  1551510 ttgtttgattttcgtgggtctcagactatttgatttgttttctctattggttgtggtggatgttatgtttgctcgcaacataggtggtgatggatc 1551605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 186 - 284
Target Start/End: Complemental strand, 4869803 - 4869707
Alignment:
Q  186 tcggtggttgtttggtttt-ctgggtctcgaactatttgattcgttttctctcttggttgtggtggaggttatgtttgctcacaacataggtggtgatgg 284  Q
    ||||||||||||||||||| | ||| ||   ||||||||||||||||||||||||||||| ||||||||||| ||||| |  ||||||||||||||||||    
T  4869803 tcggtggttgtttggttttaccggggct---actatttgattcgttttctctcttggttgcggtggaggttacgtttgatagcaacataggtggtgatgg 4869707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 274 - 355
Target Start/End: Complemental strand, 17375382 - 17375302
Alignment:
Q  274 ggtggtgatggatcgtctctgggtttcgcttaggaattgttatggttttgatggatctttggttgtgttggtctgtggtgct 355  Q
    |||||||||||||| | ||| |||| |||||| ||| ||||||||||| |||| |||||||||||||||||| |||||||||    
T  17375382 ggtggtgatggatcatatctaggtt-cgcttatgaactgttatggtttcgatgaatctttggttgtgttggtttgtggtgct 17375302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 315 - 355
Target Start/End: Complemental strand, 34660351 - 34660311
Alignment:
Q  315 atggttttgatggatctttggttgtgttggtctgtggtgct 355  Q
    ||||||| ||||||||||||||||||||||| |||||||||    
T  34660351 atggtttcgatggatctttggttgtgttggtttgtggtgct 34660311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 274 - 345
Target Start/End: Original strand, 17281961 - 17282031
Alignment:
Q  274 ggtggtgatggatcgtctctgggtttcgcttaggaattgttatggttttgatggatctttggttgtgttggt 345  Q
    |||||||||||||| | ||| ||||| ||||| ||| |  |||||||| |||||||||||||||||||||||    
T  17281961 ggtggtgatggatcatatctaggttt-gcttatgaacttatatggtttcgatggatctttggttgtgttggt 17282031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 314 - 352
Target Start/End: Complemental strand, 1895476 - 1895438
Alignment:
Q  314 tatggttttgatggatctttggttgtgttggtctgtggt 352  Q
    |||||||| ||||||||||||||||||||||| ||||||    
T  1895476 tatggtttcgatggatctttggttgtgttggtttgtggt 1895438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 249
Target Start/End: Complemental strand, 34660417 - 34660352
Alignment:
Q  182 cttgtcggtggttgtttggttttctg-ggtctcgaactatttgattcgttttctctcttggttgtggtg 249  Q
    ||||||||||||||||||||||| |  || ||   |||||||||||||||||||||||| |||||||||    
T  34660417 cttgtcggtggttgtttggttttattagggct---actatttgattcgttttctctcttagttgtggtg 34660352  T

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Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 311 - 353
Target Start/End: Original strand, 38531244 - 38531286
Alignment:
Q  311 tgttatggttttgatggatctttggttgtgttggtctgtggtg 353  Q
    ||||||||||||||||||| ||| ||||||||||| |||||||    
T  38531244 tgttatggttttgatggattttttgttgtgttggtttgtggtg 38531286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 288
Target Start/End: Original strand, 38531147 - 38531208
Alignment:
Q  228 gttttctctcttggttgtgg-tggaggttatgtttgctcacaacataggtggtgatggatcg 288  Q
    ||||||| ||||||| |||| |||||||| |||||| || ||||||| ||||||||||||||    
T  38531147 gttttctttcttggtggtggatggaggttttgtttgttcgcaacatatgtggtgatggatcg 38531208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 315 - 355
Target Start/End: Complemental strand, 4869710 - 4869670
Alignment:
Q  315 atggttttgatggatctttggttgtgttggtctgtggtgct 355  Q
    ||||||||||||||||||||||||| ||||| || ||||||    
T  4869710 atggttttgatggatctttggttgttttggtttgcggtgct 4869670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 77; Significance: 1e-35; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 182 - 281
Target Start/End: Complemental strand, 53202487 - 53202387
Alignment:
Q  182 cttgtcggtggttgtttggttttc-tgggtctcgaactatttgattcgttttctctcttggttgtggtggaggttatgtttgctcacaacataggtggtg 280  Q
    |||||| ||||||||||||||||| |||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  53202487 cttgtctgtggttgtttggttttcgtgggtctcaaactatttgatttgttttctctcttggttgtggtggaggttatgtttgctcgcaacataggtggtg 53202388  T
Q  281 a 281  Q
    |    
T  53202387 a 53202387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 182 - 287
Target Start/End: Original strand, 23054135 - 23054241
Alignment:
Q  182 cttgtcggtggttgtttggttttc-tgggtctcgaactatttgattcgttttctctcttggttgtggtggaggttatgtttgctcacaacataggtggtg 280  Q
    |||||| ||||||||||||||||| |||||||   ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  23054135 cttgtcagtggttgtttggttttcgtgggtctgagactatttgatttgttttctctcttggttgtggtggaggttatgtttgctcgcaacataggtggtg 23054234  T
Q  281 atggatc 287  Q
    |||||||    
T  23054235 atggatc 23054241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 182 - 287
Target Start/End: Original strand, 47518352 - 47518458
Alignment:
Q  182 cttgtcggtggttgtttggttttc-tgggtctcgaactatttgattcgttttctctcttggttgtggtggaggttatgtttgctcacaacataggtggtg 280  Q
    |||||||||||||||||||||||| ||||||||  ||||||||||| |||||||||||  ||||||||||||||||||||||||| ||||||||||||||    
T  47518352 cttgtcggtggttgtttggttttcatgggtctcagactatttgatttgttttctctctatgttgtggtggaggttatgtttgctcgcaacataggtggtg 47518451  T
Q  281 atggatc 287  Q
    |||||||    
T  47518452 atggatc 47518458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 230 - 288
Target Start/End: Complemental strand, 6410164 - 6410105
Alignment:
Q  230 tttctctcttggttgtgg-tggaggttatgtttgctcacaacataggtggtgatggatcg 288  Q
    ||||||||||||| |||| |||||||||||||||||| ||| ||||||||||||||||||    
T  6410164 tttctctcttggtggtggatggaggttatgtttgctcgcaaaataggtggtgatggatcg 6410105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 246 - 288
Target Start/End: Original strand, 24957572 - 24957614
Alignment:
Q  246 ggtggaggttatgtttgctcacaacataggtggtgatggatcg 288  Q
    |||||||||||||||||||| ||||||||||||||||| ||||    
T  24957572 ggtggaggttatgtttgctcgcaacataggtggtgatgtatcg 24957614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 298 - 355
Target Start/End: Original strand, 23054273 - 23054330
Alignment:
Q  298 ttcgcttaggaattgttatggttttgatggatctttggttgtgttggtctgtggtgct 355  Q
    |||||||| ||| |||||||||||  ||||||||||||||||||||||  ||||||||    
T  23054273 ttcgcttatgaactgttatggtttcaatggatctttggttgtgttggttcgtggtgct 23054330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 314 - 352
Target Start/End: Original strand, 34227074 - 34227112
Alignment:
Q  314 tatggttttgatggatctttggttgtgttggtctgtggt 352  Q
    ||||||||  |||||||||||||||||||||||||||||    
T  34227074 tatggtttcaatggatctttggttgtgttggtctgtggt 34227112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 72; Significance: 1e-32; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 182 - 288
Target Start/End: Original strand, 7766906 - 7767013
Alignment:
Q  182 cttgtcggtggttgtttggttttc-tgggtctcgaactatttgattcgttttctctcttggttgtggtggaggttatgtttgctcacaacataggtggtg 280  Q
    |||| ||||||||||||||||||| ||||||||  ||||||||||| ||||||||||||||||||| |||||||||||||||||| ||||||||||||||    
T  7766906 cttgccggtggttgtttggttttcgtgggtctcagactatttgatttgttttctctcttggttgtgatggaggttatgtttgctcgcaacataggtggtg 7767005  T
Q  281 atggatcg 288  Q
    || |||||    
T  7767006 attgatcg 7767013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 217 - 352
Target Start/End: Original strand, 41355483 - 41355617
Alignment:
Q  217 ctatttgattcgttttctctcttggttgtggtggaggttatgtttgctcacaacataggtggtgatggatcgtctctgggtttcgcttaggaattgttat 316  Q
    |||||||||| |||||||||||||||||||||||||||||| ||||||| ||||||||| ||||||||||| | |||  | |||||| | ||| |  |||    
T  41355483 ctatttgatttgttttctctcttggttgtggtggaggttatatttgctcgcaacataggcggtgatggatcatatctatg-ttcgctcatgaacttatat 41355581  T
Q  317 ggttttgatggatctttggttgtgttggtctgtggt 352  Q
    ||||| ||||||||||||||||||||||| ||||||    
T  41355582 ggtttcgatggatctttggttgtgttggtttgtggt 41355617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 182 - 283
Target Start/End: Complemental strand, 7271992 - 7271893
Alignment:
Q  182 cttgtcggtggttgtttggttttct-gggtctcgaactatttgattcgttttctctcttggttgtggtggaggttatgtttgctcacaacataggtggtg 280  Q
    |||||| |||||||||||||||| | ||| ||   |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  7271992 cttgtcagtggttgtttggttttattggggct---actatttgattcgttttctctcttggttgtggtggaggttatgtttgctcgcaacataggtggtg 7271896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 190 - 288
Target Start/End: Original strand, 27169997 - 27170097
Alignment:
Q  190 tggttgtttggttttc-tgggtctcgaactatttgattcgtttt-ctctcttggttgtggtggaggttatgtttgctcacaacataggtggtgatggatc 287  Q
    |||||||||||||||| ||||||||   |||||||||||||||| ||||||||||||||||||||||||||||||||| |||| || |||||||||||||    
T  27169997 tggttgtttggttttcgtgggtctcaggctatttgattcgtttttctctcttggttgtggtggaggttatgtttgctcgcaacgtaagtggtgatggatc 27170096  T
Q  288 g 288  Q
    |    
T  27170097 g 27170097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 178 - 287
Target Start/End: Complemental strand, 18697160 - 18697048
Alignment:
Q  178 gatacttgtcggtggttgtttggttttc-tgggtctcgaactatttgattcgttttctctcttggttgtg--gtggaggttatgtttgctcacaacatag 274  Q
    |||| ||||||||||||||||||||||| ||||||||  ||||||||||| ||||| | | |||||||||  ||||||||||||||||| | ||||||||    
T  18697160 gataattgtcggtggttgtttggttttcgtgggtctcagactatttgatttgttttttatattggttgtgtggtggaggttatgtttgcccgcaacatag 18697061  T
Q  275 gtggtgatggatc 287  Q
    |||||||||||||    
T  18697060 gtggtgatggatc 18697048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 216 - 284
Target Start/End: Original strand, 6030323 - 6030391
Alignment:
Q  216 actatttgattcgttttctctcttggttgtggtggaggttatgtttgctcacaacataggtggtgatgg 284  Q
    ||||||||||||||||||||||||||||| |||||| |||||||||| ||  |||||||||||||||||    
T  6030323 actatttgattcgttttctctcttggttgcggtggatgttatgtttgatcggaacataggtggtgatgg 6030391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 216 - 284
Target Start/End: Complemental strand, 26656895 - 26656827
Alignment:
Q  216 actatttgattcgttttctctcttggttgtggtggaggttatgtttgctcacaacataggtggtgatgg 284  Q
    |||||||||||||||||||||||||||||| ||| ||||||||||||||| ||| ||| ||||||||||    
T  26656895 actatttgattcgttttctctcttggttgttgtgaaggttatgtttgctcgcaatataagtggtgatgg 26656827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 216 - 284
Target Start/End: Complemental strand, 26928482 - 26928414
Alignment:
Q  216 actatttgattcgttttctctcttggttgtggtggaggttatgtttgctcacaacataggtggtgatgg 284  Q
    |||||||||||||||||||||||||||||| ||| ||||||||||||||| ||| ||| ||||||||||    
T  26928482 actatttgattcgttttctctcttggttgttgtgaaggttatgtttgctcgcaatataagtggtgatgg 26928414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 274 - 355
Target Start/End: Original strand, 7767022 - 7767102
Alignment:
Q  274 ggtggtgatggatcgtctctgggtttcgcttaggaattgttatggttttgatggatctttggttgtgttggtctgtggtgct 355  Q
    |||||||||||||| | ||| |||| | |||| ||||||||||||||| ||||||||||||||||||||||| |||||||||    
T  7767022 ggtggtgatggatcatatctaggtt-cacttatgaattgttatggtttcgatggatctttggttgtgttggtttgtggtgct 7767102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 274 - 355
Target Start/End: Complemental strand, 18697038 - 18696958
Alignment:
Q  274 ggtggtgatggatcgtctctgggtttcgcttaggaattgttatggttttgatggatctttggttgtgttggtctgtggtgct 355  Q
    |||||||||||||| | ||| |||| |||||| ||| |||||||| || | ||||||||||||||||||||| |||||||||    
T  18697038 ggtggtgatggatcatatctaggtt-cgcttatgaactgttatgggttcggtggatctttggttgtgttggtttgtggtgct 18696958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 302 - 355
Target Start/End: Original strand, 27170133 - 27170186
Alignment:
Q  302 cttaggaattgttatggttttgatggatctttggttgtgttggtctgtggtgct 355  Q
    |||| ||| ||||||||||| ||||||||||||||||||||||| |||||||||    
T  27170133 cttacgaactgttatggtttcgatggatctttggttgtgttggtttgtggtgct 27170186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 315 - 355
Target Start/End: Original strand, 6030388 - 6030428
Alignment:
Q  315 atggttttgatggatctttggttgtgttggtctgtggtgct 355  Q
    ||||||| ||||||||||||||||||||||| |||||||||    
T  6030388 atggtttcgatggatctttggttgtgttggtttgtggtgct 6030428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 323 - 355
Target Start/End: Complemental strand, 7271891 - 7271859
Alignment:
Q  323 gatggatctttggttgtgttggtctgtggtgct 355  Q
    ||||||||||||||||||||||| |||||||||    
T  7271891 gatggatctttggttgtgttggtttgtggtgct 7271859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 71; Significance: 4e-32; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 193 - 286
Target Start/End: Complemental strand, 20740788 - 20740694
Alignment:
Q  193 ttgtttggttttc-tgggtctcgaactatttgattcgttttctctcttggttgtggtggaggttatgtttgctcacaacataggtggtgatggat 286  Q
    ||||||||||||| |||||||| |||||||||||| |||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||    
T  20740788 ttgtttggttttcgtgggtctcaaactatttgatttgttttctctcttggttgtggtggatgttatgtttgctcgcaacataggtggtgatggat 20740694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 182 - 288
Target Start/End: Complemental strand, 21881688 - 21881581
Alignment:
Q  182 cttgtcggtggttgtttggttttc-tgggtctcgaactatttgattcgttttctctcttggttgtggtggaggttatgtttgctcacaacataggtggtg 280  Q
    ||||||||| |||||||||||||| ||| ||||  |||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||| ||||||||    
T  21881688 cttgtcggtcgttgtttggttttcgtggctctcagactatttgattcgttttctctcttggctgtggcggaggttatgtttgctcgcaacaaaggtggtg 21881589  T
Q  281 atggatcg 288  Q
    ||||||||    
T  21881588 atggatcg 21881581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 311 - 355
Target Start/End: Complemental strand, 30845626 - 30845582
Alignment:
Q  311 tgttatggttttgatggatctttggttgtgttggtctgtggtgct 355  Q
    |||||||||||||||| || ||||||||||||||| | |||||||    
T  30845626 tgttatggttttgatgaatttttggttgtgttggtttatggtgct 30845582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 4e-29; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 188 - 288
Target Start/End: Complemental strand, 3302790 - 3302689
Alignment:
Q  188 ggtggttgtttggttttc-tgggtctcgaactatttgattcgttttctctcttggttgtggtggaggttatgtttgctcacaacataggtggtgatggat 286  Q
    |||||||||||||||||| ||| ||||  |||||||||||| ||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |||    
T  3302790 ggtggttgtttggttttcgtggatctcagactatttgattcatttcctctcttggttgtggtggaggttatgtttgctcgcaacataggtggtgatagat 3302691  T
Q  287 cg 288  Q
    ||    
T  3302690 cg 3302689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 298 - 355
Target Start/End: Complemental strand, 3302657 - 3302600
Alignment:
Q  298 ttcgcttaggaattgttatggttttgatggatctttggttgtgttggtctgtggtgct 355  Q
    ||||||||  || |||||| |||| ||||||||||||||||| ||||| |||||||||    
T  3302657 ttcgcttattaactgttatagtttcgatggatctttggttgtattggtatgtggtgct 3302600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 65; Significance: 2e-28; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 182 - 285
Target Start/End: Complemental strand, 10409046 - 10408942
Alignment:
Q  182 cttgtcggtggttgtttggttttc-tgggtctcgaactatttgattcgttttctctcttggttgtggtggaggttatgtttgctcacaacataggtggtg 280  Q
    ||||| ||||||| |||||||||  |||||||| ||||||||||||  || |||||||||||||||||||||||||||||||||| ||||||||||||||    
T  10409046 cttgttggtggttatttggtttttgtgggtctcaaactatttgattttttctctctcttggttgtggtggaggttatgtttgctcgcaacataggtggtg 10408947  T
Q  281 atgga 285  Q
    |||||    
T  10408946 atgga 10408942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 274 - 355
Target Start/End: Complemental strand, 5994735 - 5994655
Alignment:
Q  274 ggtggtgatggatcgtctctgggtttcgcttaggaattgttatggttttgatggatctttggttgtgttggtctgtggtgct 355  Q
    |||||||||||||| | |||||||| |||||| ||| ||||||||||||||||||||||||||||||||||| |||||||||    
T  5994735 ggtggtgatggatcatatctgggtt-cgcttatgaactgttatggttttgatggatctttggttgtgttggtttgtggtgct 5994655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 187 - 274
Target Start/End: Complemental strand, 5994846 - 5994757
Alignment:
Q  187 cggtggttgtttggttttc-tgggtctcgaactatttgattcgttttctctcttggttgtgg-tggaggttatgtttgctcacaacatag 274  Q
    ||||| ||||||||||||| |||| ||| |||| ||||||| |||||||||||||||||||| |||| ||||||||||||| ||||||||    
T  5994846 cggtgattgtttggttttcgtgggcctcaaactgtttgatttgttttctctcttggttgtggatggatgttatgtttgctcgcaacatag 5994757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 230 - 286
Target Start/End: Complemental strand, 6444208 - 6444151
Alignment:
Q  230 tttctctcttggttgtgg-tggaggttatgtttgctcacaacataggtggtgatggat 286  Q
    |||||||||||||||||| |||||||||||||||||| |||| |||||||| ||||||    
T  6444208 tttctctcttggttgtggatggaggttatgtttgctcgcaacttaggtggttatggat 6444151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 274 - 355
Target Start/End: Complemental strand, 10408930 - 10408850
Alignment:
Q  274 ggtggtgatggatcgtctctgggtttcgcttaggaattgttatggttttgatggatctttggttgtgttggtctgtggtgct 355  Q
    |||||||||||||| | ||| |||| |||||| ||  ||||||||||| |||| |||||||||||||||||| |||||||||    
T  10408930 ggtggtgatggatcatatctaggtt-cgcttatgatatgttatggtttcgatgaatctttggttgtgttggtttgtggtgct 10408850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 315 - 355
Target Start/End: Original strand, 18269763 - 18269803
Alignment:
Q  315 atggttttgatggatctttggttgtgttggtctgtggtgct 355  Q
    ||||||| ||||||||||||||||||||||| |||||||||    
T  18269763 atggtttcgatggatctttggttgtgttggtttgtggtgct 18269803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 226 - 284
Target Start/End: Original strand, 18269708 - 18269766
Alignment:
Q  226 tcgttttctctcttggttgtggtggaggttatgtttgctcacaacataggtggtgatgg 284  Q
    ||||||||||||||| || || |||||||||||| || ||  |||||||||||||||||    
T  18269708 tcgttttctctcttgattatgatggaggttatgtctgatcgaaacataggtggtgatgg 18269766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 311 - 355
Target Start/End: Complemental strand, 43276048 - 43276004
Alignment:
Q  311 tgttatggttttgatggatctttggttgtgttggtctgtggtgct 355  Q
    ||||||| ||| |||| |||||||||||||||||| |||||||||    
T  43276048 tgttatgatttcgatgaatctttggttgtgttggtttgtggtgct 43276004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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