View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20552_high_18 (Length: 217)
Name: NF20552_high_18
Description: NF20552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20552_high_18 |
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Alignment Details
Target: chr4 (Bit Score: 171; Significance: 5e-92; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 17 - 199
Target Start/End: Original strand, 32119127 - 32119308
Alignment:
| Q |
17 |
aatattggaaacacgaaattggcatgtgatgattcgctgagtccgttggaaatttcagcttcagcatacttccaaactactcacctaataatcaaaatat |
116 |
Q |
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| T |
32119127 |
aatattggaaacacgaaattggcatgtgatgattcgctgagtccgttggaaatttcagcttcagcatacttccaaactactcacctaataatcaaaatat |
32119226 |
T |
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| Q |
117 |
acctcgaatcttcatctctcgtgcatgatgcatgcatatatatttgtggtatgcattagcacacaccaacccctcttatatat |
199 |
Q |
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| T |
32119227 |
acctcgaatcttcatctctcgtgcatgatgcatgcatatatatttgtggtatacattagcacacaccaa-ccctcttatatat |
32119308 |
T |
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