View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20552_high_2 (Length: 537)
Name: NF20552_high_2
Description: NF20552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20552_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 431; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 20 - 528
Target Start/End: Original strand, 44330006 - 44330508
Alignment:
| Q |
20 |
gcaagcttctttctttttccatggaccgacttgccacacttgttagttttgaatttcttgttattatgtattttttctgttctggcagattcaattatgt |
119 |
Q |
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| T |
44330006 |
gcaagcttcttacttcttccatggaccgacttgccacacttgttagttttgaatttcttgttattatgtattttttctgttctggcagattcaattatgt |
44330105 |
T |
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| Q |
120 |
tnnnnnnnnnnnnnnnnnnnttgaagtagtaattatgaatcgaattatgcacgtggctgtggttagttagttattgacgatttctgttatgtttaggtac |
219 |
Q |
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| T |
44330106 |
ttgtgtgtgtgtgt------ttgaagtagtaattatgaatcgaattatgcacgtggctgtggttagttagttattgacgatttctgttatgttaaggtac |
44330199 |
T |
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| Q |
220 |
aatctttggtaattgtagatttgataggaatatttagtatcgttgttaatttttataaattatgttcttaggttgatcctgcgaacaaccttcctttgga |
319 |
Q |
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| T |
44330200 |
aatctttggtaattgtagatttgataggaatatttagtatcgttgttaatttttataaattatgttcttaggttgatcctgcgaacaaccttcctttgga |
44330299 |
T |
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| Q |
320 |
atgtgtgataaagagagtgttcacgagttctcgaggagatgattgtatgttgctatgcccacttgacatgtaagttaaatgttcttaaggtttaattcat |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44330300 |
atgtgtgataaagagagtgttcacgagttctcgaggagatgattgtatgttgctatgcccacttgacatgtaagttaaatgttcttaaggtttaattcat |
44330399 |
T |
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| Q |
420 |
ggtcttgtatgattacagtttatatatctaaggttttaggggtgaaagacgtggtgtctaaatcatatgtatggttgtttttagcctaatgtgaaatcta |
519 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44330400 |
ggtcttgtatgattacagtttatatatctaaggttttaggggtgaaagacctggtgtctaaatcatatgtatggttgtttttagcctaatgtgaaatcta |
44330499 |
T |
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| Q |
520 |
tgtgatgat |
528 |
Q |
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| T |
44330500 |
tgtgatgat |
44330508 |
T |
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