View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20552_high_4 (Length: 447)
Name: NF20552_high_4
Description: NF20552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20552_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 137; Significance: 2e-71; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 138 - 299
Target Start/End: Complemental strand, 2239444 - 2239280
Alignment:
| Q |
138 |
ttataaacaattttagaatattcttagcatat----catagagaagataatgttacgttagtgtattttacaatattagaaatgtgaaatttgaagtcaa |
233 |
Q |
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| T |
2239444 |
ttataaacaattttagaatattcttagcatatatatcatagagaagataatgttacgttagtgtattttacaatatttgaa-tgtgaaatttgaagtcaa |
2239346 |
T |
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| Q |
234 |
atatttagatttgattgcctttatttatgtgagttattagaagtcaaatgtttagatttgattgcc |
299 |
Q |
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| T |
2239345 |
atatttagatttgattgcctttatttatgtgagttattagaagtcaaatgtttagatttgattgcc |
2239280 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 20 - 129
Target Start/End: Complemental strand, 2239579 - 2239470
Alignment:
| Q |
20 |
acatcggtcaacaaatgttatttccgtatcctccaagttttttgacaaagatagttgaaattgactgattcatgtttacaaaagcataaaaacgatatgt |
119 |
Q |
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| T |
2239579 |
acatcggtcaacaaatgttatttccgtatcctccaagttttttgacaaagatagttgaaattgactgattcatgtttacaaaagcataaaaacgatatat |
2239480 |
T |
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| Q |
120 |
atatcaaaat |
129 |
Q |
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|||||||||| |
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| T |
2239479 |
atatcaaaat |
2239470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 351 - 431
Target Start/End: Complemental strand, 2239272 - 2239192
Alignment:
| Q |
351 |
atatatgagtcattatttcaaaatcaatttacttaacaaacttcttgctaattgtcacatcatcttcatgttaagtttcat |
431 |
Q |
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| T |
2239272 |
atatatgagtcattatttcaaaatcaatttacttaacaaacttcttgctaattgtcacatcatcttcatgttaagtttcat |
2239192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 177 - 261
Target Start/End: Complemental strand, 2230640 - 2230559
Alignment:
| Q |
177 |
aagataatgttacgttagtgtattttacaatattagaaatgtgaaatttgaagtcaaatatttagatttgattgcctttatttat |
261 |
Q |
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| T |
2230640 |
aagataatgttacgtcagt--attttataatattagaaatgtg-aatttgaagtcaaatatccatatctgattgcccttatttat |
2230559 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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