View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20552_high_7 (Length: 411)
Name: NF20552_high_7
Description: NF20552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20552_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 30 - 398
Target Start/End: Complemental strand, 31573399 - 31573031
Alignment:
| Q |
30 |
tcacaaaggaaaaagtgaagctgccagcatgatctaggtttggttatacgatagtagtattgggaaggaactatatacgnnnnnnnnn-actgtaccacn |
128 |
Q |
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| T |
31573399 |
tcacaaaggaaaaagtgaagctgccagcatgatctaggtttggttatacaatagtagtattgagaaggaactatatacgttttttttttactataccaca |
31573300 |
T |
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| Q |
129 |
nnnnnntattactctctttcacaaaataggtattaaagtgccatgatttttgcattactaataggaaaataatttttggacaccga-tttctcacnnnnn |
227 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| |||||||| |
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| T |
31573299 |
aaaaaagattactctctttcacaaaataggtattaaagtgccatgatttttgcattactaatgggaaaataaattttggacaccgaatttctcacttttt |
31573200 |
T |
|
| Q |
228 |
nnnnatatagataggaaataggttttggtggtannnnnnngtggtacagtagaaaatagccactatatccatacgagtagtactgctagcataaccctga |
327 |
Q |
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| T |
31573199 |
ttttatatagataggaaataggttttggtggtatttttttgtggtacagtaaaaaatagccgctatatccatacaagtagtactgctagcataaccctga |
31573100 |
T |
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| Q |
328 |
ctaggtcatgctgtgctagcctcactccttcctatttggagaccaatatatcatcaaagttacctaccttc |
398 |
Q |
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| T |
31573099 |
ctaggtcatgctgtgctagcctcactccttcctatttggagacca--atatcatctaagttacctaccttc |
31573031 |
T |
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Target: chr7 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 13 - 65
Target Start/End: Original strand, 38348437 - 38348489
Alignment:
| Q |
13 |
gagatgaagatgaaagttcacaaaggaaaaagtgaagctgccagcatgatcta |
65 |
Q |
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| T |
38348437 |
gagatgaagatgaaagttcacaaaggaaaaagtgaagctgccagcatgatcta |
38348489 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 319 - 364
Target Start/End: Original strand, 38348544 - 38348589
Alignment:
| Q |
319 |
taaccctgactaggtcatgctgtgctagcctcactccttcctattt |
364 |
Q |
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||||| |||||||||||||||||| |||||||||| ||||||||| |
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| T |
38348544 |
taaccttgactaggtcatgctgtgacagcctcactctttcctattt |
38348589 |
T |
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