View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20552_low_10 (Length: 366)

Name: NF20552_low_10
Description: NF20552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20552_low_10
NF20552_low_10
[»] chr2 (4 HSPs)
chr2 (16-95)||(40697403-40697482)
chr2 (278-348)||(40697666-40697736)
chr2 (159-204)||(40697549-40697594)
chr2 (27-91)||(40697252-40697316)


Alignment Details
Target: chr2 (Bit Score: 80; Significance: 2e-37; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 16 - 95
Target Start/End: Original strand, 40697403 - 40697482
Alignment:
Q  16 acagacaaatagttacaacagttcaaaaccaattatagattacactaaattgtgacaatcagctccatactgaagagaag 95  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40697403 acagacaaatagttacaacagttcaaaaccaattatagattacactaaattgtgacaatcagctccatactgaagagaag 40697482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 278 - 348
Target Start/End: Original strand, 40697666 - 40697736
Alignment:
Q  278 ttatattaaatatacatgtgtttatctttagcaaaaggcctgagatctaacaaaagaagaagggaaaataa 348  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40697666 ttatattaaatatacatgtgtttatctttagcaaaaggcctgagatctaacaaaagaagaagggaaaataa 40697736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 159 - 204
Target Start/End: Original strand, 40697549 - 40697594
Alignment:
Q  159 gagtgatatcacaaatccttatatcaaggaggagtactccaagaag 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  40697549 gagtgatatcacaaatccttatatcaaggaggagtactccaagaag 40697594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 27 - 91
Target Start/End: Original strand, 40697252 - 40697316
Alignment:
Q  27 gttacaacagttcaaaaccaattatagattacactaaattgtgacaatcagctccatactgaaga 91  Q
    ||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||| |||| ||||    
T  40697252 gttacaacaattctaaaacaattatagattacactaaattgtgacaatcagctccttactaaaga 40697316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University