View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20552_low_12 (Length: 266)

Name: NF20552_low_12
Description: NF20552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20552_low_12
NF20552_low_12
[»] chr8 (8 HSPs)
chr8 (17-255)||(35355101-35355339)
chr8 (27-94)||(31711495-31711561)
chr8 (19-65)||(3093974-3094020)
chr8 (18-67)||(38501509-38501558)
chr8 (27-94)||(4586758-4586825)
chr8 (27-94)||(7680836-7680903)
chr8 (27-65)||(33590129-33590167)
chr8 (29-66)||(14532452-14532489)
[»] chr7 (6 HSPs)
chr7 (25-94)||(8062899-8062968)
chr7 (27-101)||(38838677-38838751)
chr7 (70-101)||(10228533-10228564)
chr7 (16-66)||(46720037-46720087)
chr7 (29-65)||(25688992-25689028)
chr7 (17-101)||(39608602-39608686)
[»] chr4 (9 HSPs)
chr4 (25-94)||(35255492-35255561)
chr4 (27-94)||(51151051-51151119)
chr4 (30-101)||(32933966-32934036)
chr4 (30-81)||(46805050-46805101)
chr4 (30-101)||(56095235-56095306)
chr4 (27-65)||(1758497-1758535)
chr4 (29-102)||(7010471-7010544)
chr4 (27-63)||(46216980-46217016)
chr4 (29-61)||(47097342-47097374)
[»] chr1 (6 HSPs)
chr1 (27-105)||(35621592-35621670)
chr1 (27-96)||(5529612-5529681)
chr1 (16-53)||(8234335-8234372)
chr1 (28-65)||(9890730-9890767)
chr1 (16-61)||(29795280-29795325)
chr1 (16-92)||(45679514-45679590)
[»] chr2 (7 HSPs)
chr2 (27-83)||(7165777-7165833)
chr2 (27-94)||(4877155-4877221)
chr2 (16-83)||(34883917-34883984)
chr2 (16-66)||(6686772-6686822)
chr2 (16-101)||(13478790-13478875)
chr2 (48-101)||(20167644-20167697)
chr2 (28-61)||(20966057-20966090)
[»] chr5 (7 HSPs)
chr5 (30-101)||(22391694-22391765)
chr5 (16-64)||(19342536-19342584)
chr5 (27-66)||(27001417-27001456)
chr5 (27-101)||(16127051-16127125)
chr5 (16-66)||(37181088-37181137)
chr5 (19-63)||(6645701-6645745)
chr5 (33-65)||(31949317-31949349)
[»] chr3 (2 HSPs)
chr3 (25-61)||(4136549-4136585)
chr3 (17-65)||(31186677-31186725)
[»] chr6 (2 HSPs)
chr6 (17-61)||(12291652-12291696)
chr6 (19-67)||(17848681-17848729)


Alignment Details
Target: chr8 (Bit Score: 195; Significance: 1e-106; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 17 - 255
Target Start/End: Complemental strand, 35355339 - 35355101
Alignment:
Q  17 acaattaaatactattttaaaattttaatatattgagagactattgtgacatgtcgttacacatttaaagaccaaaatgattattctcttcgacttattg 116  Q
    ||||||||||||||||||||||||| |||| |||||||||||||| |||||||  |||||||||| ||| || ||||||||||||||||||||||||||     
T  35355339 acaattaaatactattttaaaatttcaatacattgagagactattatgacatgctgttacacattcaaatactaaaatgattattctcttcgacttatta 35355240  T
Q  117 attaatggtttctttatacctttacacaagttaccttcactctcacgagacactacaaaaaccttagtatttattttattgttgttctgttcttctccaa 216  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  35355239 attaatggtttctttataactttacacaagttaccttcactctcacgagacactacaaaaaccttagtatttattttattgttgttctgttcttctctaa 35355140  T
Q  217 ttgttcctgttttcttgtatgtactctatttttcttctt 255  Q
    |||||||||||||||||||||||||||||||||||||||    
T  35355139 ttgttcctgttttcttgtatgtactctatttttcttctt 35355101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 94
Target Start/End: Original strand, 31711495 - 31711561
Alignment:
Q  27 actattttaaaattttaatatattgagagactattgtgacatgtcgttacacatttaaagaccaaaat 94  Q
    ||||||||||||||||| || ||| | ||||||||||||||  |||||| ||||||||||||||||||    
T  31711495 actattttaaaatttta-tagattaatagactattgtgacaactcgttatacatttaaagaccaaaat 31711561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 19 - 65
Target Start/End: Original strand, 3093974 - 3094020
Alignment:
Q  19 aattaaatactattttaaaattttaatatattgagagactattgtga 65  Q
    ||||||| |||||||||||||||| ||||||||| ||||||||||||    
T  3093974 aattaaagactattttaaaattttgatatattgaaagactattgtga 3094020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 67
Target Start/End: Original strand, 38501509 - 38501558
Alignment:
Q  18 caattaaatactattttaaaattttaatatattgagagactattgtgaca 67  Q
    |||||||||||||||||| ||||||  |||||||| ||||||||||||||    
T  38501509 caattaaatactattttataattttgttatattgaaagactattgtgaca 38501558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 27 - 94
Target Start/End: Complemental strand, 4586825 - 4586758
Alignment:
Q  27 actattttaaaattttaatatattgagagactattgtgacatgtcgttacacatttaaagaccaaaat 94  Q
    |||||||||||||||||||| ||| |||||||||||| ||   |||||||||||| || || ||||||    
T  4586825 actattttaaaattttaatacattaagagactattgtaactactcgttacacattcaaggatcaaaat 4586758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 27 - 94
Target Start/End: Complemental strand, 7680903 - 7680836
Alignment:
Q  27 actattttaaaattttaatatattgagagactattgtgacatgtcgttacacatttaaagaccaaaat 94  Q
    |||||||| ||||||||||||||||||||| ||||||||    |||||| |||||||  |||||||||    
T  7680903 actatttttaaattttaatatattgagagagtattgtgattactcgttagacatttatggaccaaaat 7680836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 65
Target Start/End: Complemental strand, 33590167 - 33590129
Alignment:
Q  27 actattttaaaattttaatatattgagagactattgtga 65  Q
    ||||||||| |||||||||| ||||||||||||||||||    
T  33590167 actattttacaattttaatacattgagagactattgtga 33590129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 29 - 66
Target Start/End: Original strand, 14532452 - 14532489
Alignment:
Q  29 tattttaaaattttaatatattgagagactattgtgac 66  Q
    |||||||||||||| ||||||| |||||||||||||||    
T  14532452 tattttaaaattttgatatattaagagactattgtgac 14532489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 25 - 94
Target Start/End: Original strand, 8062899 - 8062968
Alignment:
Q  25 atactattttaaaattttaatatattgagagactattgtgacatgtcgttacacatttaaagaccaaaat 94  Q
    |||||||||||||||||||||| ||||| |||||||||||||   |||||||||||| || |||||||||    
T  8062899 atactattttaaaattttaatacattgacagactattgtgactactcgttacacattcaaggaccaaaat 8062968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 27 - 101
Target Start/End: Original strand, 38838677 - 38838751
Alignment:
Q  27 actattttaaaattttaatatattgagagactattgtgacatgtcgttacacatttaaagaccaaaatgattatt 101  Q
    |||||||||||||||||||| ||||| ||| |||||||||   |||||||||||| |  ||||||||| ||||||    
T  38838677 actattttaaaattttaatacattgatagaatattgtgactactcgttacacattcagggaccaaaataattatt 38838751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 70 - 101
Target Start/End: Complemental strand, 10228564 - 10228533
Alignment:
Q  70 tcgttacacatttaaagaccaaaatgattatt 101  Q
    ||||||||||||||||||||||||||||||||    
T  10228564 tcgttacacatttaaagaccaaaatgattatt 10228533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 66
Target Start/End: Original strand, 46720037 - 46720087
Alignment:
Q  16 cacaattaaatactattttaaaattttaatatattgagagactattgtgac 66  Q
    |||||| |||||| |||||||||||| |||| |||||| ||||||||||||    
T  46720037 cacaatcaaataccattttaaaatttcaatacattgagggactattgtgac 46720087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 65
Target Start/End: Complemental strand, 25689028 - 25688992
Alignment:
Q  29 tattttaaaattttaatatattgagagactattgtga 65  Q
    ||||||| |||||||||| ||||||||||||||||||    
T  25689028 tattttagaattttaatacattgagagactattgtga 25688992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 101
Target Start/End: Original strand, 39608602 - 39608686
Alignment:
Q  17 acaattaaatactattttaaaattttaatatattgagagactattgtgacatgtcgttacacatttaaagaccaaaatgattatt 101  Q
    |||||| || |||||||||||||||| ||| ||||| | |||||||| ||   || ||||||||| || ||| ||||||||||||    
T  39608602 acaattcaaaactattttaaaattttgatacattgaaaaactattgtaactactccttacacattcaaggactaaaatgattatt 39608686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 25 - 94
Target Start/End: Original strand, 35255492 - 35255561
Alignment:
Q  25 atactattttaaaattttaatatattgagagactattgtgacatgtcgttacacatttaaagaccaaaat 94  Q
    |||||||||||||||||||||| |||||||||||||||||||   |||||||| |||||  |||||||||    
T  35255492 atactattttaaaattttaatacattgagagactattgtgactactcgttacatatttagggaccaaaat 35255561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 94
Target Start/End: Original strand, 51151051 - 51151119
Alignment:
Q  27 actattttaaaattttaatatattgagaga-ctattgtgacatgtcgttacacatttaaagaccaaaat 94  Q
    |||||||||||||||||||| |||||||||  |||||||||   |||||||||||| || |||||||||    
T  51151051 actattttaaaattttaatacattgagagatttattgtgactactcgttacacattcaaggaccaaaat 51151119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 30 - 101
Target Start/End: Complemental strand, 32934036 - 32933966
Alignment:
Q  30 attttaaaattttaatatattgagagactattgtgacatgtcgttacacatttaaagaccaaaatgattatt 101  Q
    ||||||||||||||||||||||||||| |||| ||||   || ||||||||| | |||||||||| ||||||    
T  32934036 attttaaaattttaatatattgagaga-tattatgactactcattacacattcagagaccaaaataattatt 32933966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 30 - 81
Target Start/End: Original strand, 46805050 - 46805101
Alignment:
Q  30 attttaaaattttaatatattgagagactattgtgacatgtcgttacacatt 81  Q
    ||||||||||||||||||||||| |||||||| ||||   ||||||||||||    
T  46805050 attttaaaattttaatatattgaaagactattatgactactcgttacacatt 46805101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 30 - 101
Target Start/End: Original strand, 56095235 - 56095306
Alignment:
Q  30 attttaaaattttaatatattgagagactattgtgacatgtcgttacacatttaaagaccaaaatgattatt 101  Q
    ||||||||||||||||| | ||||| |||||||||||   |||||||||||| |  ||||||||| ||||||    
T  56095235 attttaaaattttaatacaatgagatactattgtgactactcgttacacattaagggaccaaaataattatt 56095306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 65
Target Start/End: Original strand, 1758497 - 1758535
Alignment:
Q  27 actattttaaaattttaatatattgagagactattgtga 65  Q
    ||||| |||||||||||||| ||||||||||||||||||    
T  1758497 actatcttaaaattttaatacattgagagactattgtga 1758535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 102
Target Start/End: Original strand, 7010471 - 7010544
Alignment:
Q  29 tattttaaaattt-taatatattgagagactattgtgacatgtcgttacacatttaaagaccaaaatgattattc 102  Q
    ||||||||||||| | ||| |||||||||||||||||| || | ||||||||||||| ||| ||||| |||||||    
T  7010471 tattttaaaatttctgatacattgagagactattgtgatattt-gttacacatttaaggacgaaaataattattc 7010544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 63
Target Start/End: Complemental strand, 46217016 - 46216980
Alignment:
Q  27 actattttaaaattttaatatattgagagactattgt 63  Q
    |||||||||||||||| ||| ||||||||||||||||    
T  46217016 actattttaaaattttgatacattgagagactattgt 46216980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 61
Target Start/End: Complemental strand, 47097374 - 47097342
Alignment:
Q  29 tattttaaaattttaatatattgagagactatt 61  Q
    |||||||||||||||||| ||||||||||||||    
T  47097374 tattttaaaattttaatacattgagagactatt 47097342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 27 - 105
Target Start/End: Original strand, 35621592 - 35621670
Alignment:
Q  27 actattttaaaattttaatatattgagagactattgtgacatgtcgttacacatttaaagaccaaaatgattattctct 105  Q
    |||||||||||| ||||||| ||| | | ||||||||||||  ||||||||||||||| || |||||||| ||||||||    
T  35621592 actattttaaaaatttaatacatttaaaaactattgtgacaactcgttacacatttaaggatcaaaatgactattctct 35621670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 27 - 96
Target Start/End: Complemental strand, 5529681 - 5529612
Alignment:
Q  27 actattttaaaattttaatatattgagagactattgtgacatgtcgttacacatttaaagaccaaaatga 96  Q
    |||||||||||| ||| |||||||||  ||||| |||||||  || ||||||||| ||||| ||||||||    
T  5529681 actattttaaaactttgatatattgaaggactactgtgacaactccttacacattcaaagagcaaaatga 5529612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 16 - 53
Target Start/End: Original strand, 8234335 - 8234372
Alignment:
Q  16 cacaattaaatactattttaaaattttaatatattgag 53  Q
    |||||||||| |||||||||||||||| ||||||||||    
T  8234335 cacaattaaaaactattttaaaattttgatatattgag 8234372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 28 - 65
Target Start/End: Original strand, 9890730 - 9890767
Alignment:
Q  28 ctattttaaaattttaatatattgagagactattgtga 65  Q
    |||||||| |||||||||| ||||||||||||||||||    
T  9890730 ctattttagaattttaatacattgagagactattgtga 9890767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 16 - 61
Target Start/End: Original strand, 29795280 - 29795325
Alignment:
Q  16 cacaattaaatactattttaaaattttaatatattgagagactatt 61  Q
    |||||| |||||||||||||||||||| ||||||| | ||||||||    
T  29795280 cacaatcaaatactattttaaaattttgatatattaaaagactatt 29795325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 92
Target Start/End: Complemental strand, 45679590 - 45679514
Alignment:
Q  16 cacaattaaatactattttaaaattttaatatattgagagactattgtgacatgtcgttacacatttaaagaccaaa 92  Q
    |||||| ||| ||||||||||||||||||||  ||||  || |||||||||   |||||||||||| | ||||||||    
T  45679590 cacaatcaaaaactattttaaaattttaatacgttgatggattattgtgactactcgttacacattcagagaccaaa 45679514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 27 - 83
Target Start/End: Original strand, 7165777 - 7165833
Alignment:
Q  27 actattttaaaattttaatatattgagagactattgtgacatgtcgttacacattta 83  Q
    |||||||||||||||||||| ||||| |||||||||||||   ||||||||||||||    
T  7165777 actattttaaaattttaatacattgaaagactattgtgactactcgttacacattta 7165833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 94
Target Start/End: Original strand, 4877155 - 4877221
Alignment:
Q  27 actattttaaaattttaatatattgagagactattgtgacatgtcgttacacatttaaagaccaaaat 94  Q
    ||||||||||||||||| || ||| | ||||||||||||||  |||||| ||||||||||||||||||    
T  4877155 actattttaaaatttta-tagattaatagactattgtgacaactcgttatacatttaaagaccaaaat 4877221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 16 - 83
Target Start/End: Complemental strand, 34883984 - 34883917
Alignment:
Q  16 cacaattaaatactattttaaaattttaatatattgagagactattgtgacatgtcgttacacattta 83  Q
    |||||||| | |||||||||||||||| ||| |||||| ||||||||||||  | | |||||||||||    
T  34883984 cacaattagagactattttaaaattttgatacattgagggactattgtgaccggccattacacattta 34883917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 66
Target Start/End: Complemental strand, 6686822 - 6686772
Alignment:
Q  16 cacaattaaatactattttaaaattttaatatattgagagactattgtgac 66  Q
    |||||| ||| |||||||||||||||| ||||||||||| |||||| ||||    
T  6686822 cacaatcaaaaactattttaaaattttgatatattgagaaactattttgac 6686772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 16 - 101
Target Start/End: Original strand, 13478790 - 13478875
Alignment:
Q  16 cacaattaaatactattttaaaattttaatatattgagagactattgtgacatgtcgttacacatttaaagaccaaaatgattatt 101  Q
    |||||| ||| |||||||||||||||| ||||||| | ||| |||||| ||   || ||||| |||||||||  ||||||||||||    
T  13478790 cacaatcaaaaactattttaaaattttgatatattcaaagattattgttactattcattacatatttaaagattaaaatgattatt 13478875  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 48 - 101
Target Start/End: Original strand, 20167644 - 20167697
Alignment:
Q  48 attgagagactattgtgacatgtcgttacacatttaaagaccaaaatgattatt 101  Q
    |||||| ||||||||||||   | ||||||||||||||||||||||||| ||||    
T  20167644 attgagtgactattgtgactacttgttacacatttaaagaccaaaatgactatt 20167697  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 28 - 61
Target Start/End: Complemental strand, 20966090 - 20966057
Alignment:
Q  28 ctattttaaaattttaatatattgagagactatt 61  Q
    ||||||||||||||||||| ||||||||||||||    
T  20966090 ctattttaaaattttaatagattgagagactatt 20966057  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 101
Target Start/End: Complemental strand, 22391765 - 22391694
Alignment:
Q  30 attttaaaattttaatatattgagagactattgtgacatgtcgttacacatttaaagaccaaaatgattatt 101  Q
    ||||||||||||| ||||||||| |||||||| ||||   ||||||||||||||| || ||| |||||||||    
T  22391765 attttaaaattttgatatattgaaagactattatgactattcgttacacatttaaggatcaatatgattatt 22391694  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 19342536 - 19342584
Alignment:
Q  16 cacaattaaatactattttaaaattttaatatattgagagactattgtg 64  Q
    |||||| ||| |||||||||||||||||||||||||| ||| |||||||    
T  19342536 cacaatcaaaaactattttaaaattttaatatattgatagattattgtg 19342584  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 27 - 66
Target Start/End: Original strand, 27001417 - 27001456
Alignment:
Q  27 actattttaaaattttaatatattgagagactattgtgac 66  Q
    |||||||||||||||| |||||| ||||||||||||||||    
T  27001417 actattttaaaattttgatatatcgagagactattgtgac 27001456  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 101
Target Start/End: Complemental strand, 16127125 - 16127051
Alignment:
Q  27 actattttaaaattttaatatattgagagactattgtgacatgtcgttacacatttaaagaccaaaatgattatt 101  Q
    |||||||| ||||||| |||  ||||||||||||||||||   || |||||||||||  ||||||||||| ||||    
T  16127125 actattttgaaattttgatactttgagagactattgtgactactccttacacatttagggaccaaaatgactatt 16127051  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 66
Target Start/End: Complemental strand, 37181137 - 37181088
Alignment:
Q  16 cacaattaaatactattttaaaattttaatatattgagagactattgtgac 66  Q
    |||||||||| ||| |||||||||||||||||||| |||||||||| ||||    
T  37181137 cacaattaaagact-ttttaaaattttaatatattaagagactattatgac 37181088  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 6645745 - 6645701
Alignment:
Q  19 aattaaatactattttaaaattttaatatattgagagactattgt 63  Q
    ||||||| |||||||||||||||| ||| ||||| ||||||||||    
T  6645745 aattaaagactattttaaaattttgatacattgatagactattgt 6645701  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 65
Target Start/End: Original strand, 31949317 - 31949349
Alignment:
Q  33 ttaaaattttaatatattgagagactattgtga 65  Q
    |||||||||||||||||| ||||||||||||||    
T  31949317 ttaaaattttaatatattaagagactattgtga 31949349  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 61
Target Start/End: Complemental strand, 4136585 - 4136549
Alignment:
Q  25 atactattttaaaattttaatatattgagagactatt 61  Q
    |||||||||||||||||||||||||||| ||||||||    
T  4136585 atactattttaaaattttaatatattgaaagactatt 4136549  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 31186677 - 31186725
Alignment:
Q  17 acaattaaatactattttaaaattttaatatattgagagactattgtga 65  Q
    ||||| ||| |||||||||||||||| ||||||  ||||||||||||||    
T  31186677 acaatcaaaaactattttaaaattttgatatatcaagagactattgtga 31186725  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 61
Target Start/End: Original strand, 12291652 - 12291696
Alignment:
Q  17 acaattaaatactattttaaaattttaatatattgagagactatt 61  Q
    ||||| ||| |||||||||||||||||||| |||||| |||||||    
T  12291652 acaatcaaagactattttaaaattttaatacattgagggactatt 12291696  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 17848729 - 17848681
Alignment:
Q  19 aattaaatactattttaaaattttaatatattgagagactattgtgaca 67  Q
    ||||||| |||| ||||||||||||||| ||| ||||||||| ||||||    
T  17848729 aattaaaaactaatttaaaattttaatacatttagagactatcgtgaca 17848681  T

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