View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20552_low_15 (Length: 237)
Name: NF20552_low_15
Description: NF20552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20552_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 14 - 220
Target Start/End: Complemental strand, 13138414 - 13138208
Alignment:
| Q |
14 |
caaaggagggggatataaagccaaaacctccttagaatttaacaaacaaactcacacattcctgatttatttttagctataaggatgctttaatacaatt |
113 |
Q |
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| T |
13138414 |
caaaggagggggagataaagccaaaacctccttagaatttaacaaacaaactcacacattcttgatttatttttagctataaggatgctttaatacaatt |
13138315 |
T |
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| Q |
114 |
aggagcacttaaccagaccataagatgattaagggataagcctaagttagctaaagtgtcagcacaactgtttcctaattccctaaacacatgggtagcc |
213 |
Q |
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| T |
13138314 |
aggagcacttaaccagaccataagatgattaagggataagcctaagttagctaaagtgtcagcacaactgtttcctaattccctaaacacatgggtagcc |
13138215 |
T |
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| Q |
214 |
agaaagt |
220 |
Q |
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||||||| |
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| T |
13138214 |
agaaagt |
13138208 |
T |
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Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 16472632 - 16472677
Alignment:
| Q |
14 |
caaaggagggggatataaagccaaaacctccttagaatttaacaaa |
59 |
Q |
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||||||||||||| || |||||||||||||||||||| |||||||| |
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| T |
16472632 |
caaaggagggggacatcaagccaaaacctccttagaaattaacaaa |
16472677 |
T |
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