View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20552_low_16 (Length: 231)
Name: NF20552_low_16
Description: NF20552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20552_low_16 |
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Alignment Details
Target: chr6 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 126 - 218
Target Start/End: Original strand, 29028368 - 29028460
Alignment:
| Q |
126 |
attgtgttttatatcgaaaaggttattcttgttcattctatcattgttgtttgttgtcgtgttgttataatatttgattcaaacttgtaaatg |
218 |
Q |
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| T |
29028368 |
attgtgttttatatcgaaaaggttattcttgttcattctatcattgttgtttgttgtcgtgttgttataatatttgattcaaacttgtaaatg |
29028460 |
T |
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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 90
Target Start/End: Original strand, 29026674 - 29026751
Alignment:
| Q |
16 |
atgaaaataaaaataaattgaaagtaaacatgctgtactttagaga----ggtggatctttatttttgaaacaacgaag |
90 |
Q |
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| T |
29026674 |
atgaaaattaaattaaattggaagtaaacatgc-ctactttagagaggtgggtggttctttgtttttgaaacaacgaag |
29026751 |
T |
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