View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20552_low_17 (Length: 224)
Name: NF20552_low_17
Description: NF20552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20552_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 178; Significance: 4e-96; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 18 - 203
Target Start/End: Original strand, 42874946 - 42875131
Alignment:
| Q |
18 |
cagagagaagattttcaagtttcttgacggagaagttactaactccaatagctttggtgagtccaagtttcaatccttcttccatggattcccaaacacc |
117 |
Q |
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| T |
42874946 |
cagagagaagattttcaagtttcttgacagagaagttactaactccaatagctttggtgagtccaagtttcaatccttcttccatggattcccaaacacc |
42875045 |
T |
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| Q |
118 |
cttcacatcaaatggtaagagatctgccacatcaattggaaatgtaaactttccaggttgagagctaagtggccaatgaatcaaat |
203 |
Q |
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| T |
42875046 |
cttcacatcaaatggtaagagatctgccacatcaattggaaatgtaaactttccaggctgagagctaagtggccaatgaatcaaat |
42875131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 18 - 203
Target Start/End: Original strand, 42884077 - 42884262
Alignment:
| Q |
18 |
cagagagaagattttcaagtttcttgacggagaagttactaactccaatagctttggtgagtccaagtttcaatccttcttccatggattcccaaacacc |
117 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42884077 |
cagagagaagattttcaagtttcttgacagagaagttactaactccaatagctttggtgagtccaagtttcaatccttcttccatggattcccaaacacc |
42884176 |
T |
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| Q |
118 |
cttcacatcaaatggtaagagatctgccacatcaattggaaatgtaaactttccaggttgagagctaagtggccaatgaatcaaat |
203 |
Q |
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| T |
42884177 |
cttcacatcaaatggtaagagatctgccacatcaattggaaatgtaaactttccaggctgagagctaagtggccaatgaatcaaat |
42884262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 18 - 203
Target Start/End: Complemental strand, 42890355 - 42890170
Alignment:
| Q |
18 |
cagagagaagattttcaagtttcttgacggagaagttactaactccaatagctttggtgagtccaagtttcaatccttcttccatggattcccaaacacc |
117 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42890355 |
cagagagaagattttcaagtttcttgacagagaagttactaactccaatagctttggtgagtccaagtttcaatccttcttccatggattcccaaacacc |
42890256 |
T |
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| Q |
118 |
cttcacatcaaatggtaagagatctgccacatcaattggaaatgtaaactttccaggttgagagctaagtggccaatgaatcaaat |
203 |
Q |
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| T |
42890255 |
cttcacatcaaatggtaagagatctgccacatcaattggaaatgtaaactttccaggctgagagctaagtggccaatgaatcaaat |
42890170 |
T |
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