View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20552_low_3 (Length: 455)
Name: NF20552_low_3
Description: NF20552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20552_low_3 |
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| [»] scaffold0174 (3 HSPs) |
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Alignment Details
Target: scaffold0174 (Bit Score: 138; Significance: 6e-72; HSPs: 3)
Name: scaffold0174
Description:
Target: scaffold0174; HSP #1
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 274 - 435
Target Start/End: Complemental strand, 32565 - 32404
Alignment:
| Q |
274 |
caaatatttactatacaatatacaatatctaatagctcttttgttcttgtatttgtcttgtttcataatcactataaataatgttgattgaattcagatt |
373 |
Q |
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| T |
32565 |
caaatatttactatacaatatacaatatctaatagctctttagttcacgtatttgtcttgtttcatgatcactataaataatgctaattgaattcagatt |
32466 |
T |
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| Q |
374 |
tcactacaattaaactcttggtaagtcaagaatgaaaactaaacctttaatcttcgtgttct |
435 |
Q |
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| T |
32465 |
tcactacaattaaactcttggtaagtcaagaatgaaaactaaacctttaatcttcgtgttct |
32404 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0174; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 87 - 191
Target Start/End: Complemental strand, 33268 - 33164
Alignment:
| Q |
87 |
tatacaagaagatagtttaactcaatatattttaactagtacatgtaacaaacactaaaacagtaatgactcatgccaaagcgtaaacaccttaccagta |
186 |
Q |
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| T |
33268 |
tatacaagaagatagtttaactcaatatattttaactagtacatgtaacaaacactaaaacagtaatgactcatgccaaagggtaaacacctttccagta |
33169 |
T |
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| Q |
187 |
atatt |
191 |
Q |
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||||| |
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| T |
33168 |
atatt |
33164 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0174; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 213 - 269
Target Start/End: Complemental strand, 32988 - 32932
Alignment:
| Q |
213 |
acaaacacttcccaatttacaaatcaatacatgttgatggcccattattctcaccat |
269 |
Q |
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| T |
32988 |
acaaacacgtcgcaatttacaaatcaatatatgttgacggcccattattctcaccat |
32932 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 97; Significance: 2e-47; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 115 - 435
Target Start/End: Complemental strand, 24895715 - 24895397
Alignment:
| Q |
115 |
attttaactagtacatgtaacaaacactaaaacagtaatgactcatgccaaagcgtaaacaccttaccagtaatatttaaaattagatttcctcattt-a |
213 |
Q |
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| T |
24895715 |
attttaactaatacatgtaaaaaacactaaaacataagtgacttatgctaaagcacaagcaccttactagtaatattaaaaatca-----cctaatttga |
24895621 |
T |
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| Q |
214 |
caaacacttcccaatttacaaatcaatacatgttgatggcccattattctcaccattagtcaaatatttactatacaatatacaatatctaata--gctc |
311 |
Q |
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| T |
24895620 |
caaacacaaccgaatttatgtctcaataggtgttgatggcccattattatcacaatgagtcaaatttttactatgcattatatattatctaacaaggctc |
24895521 |
T |
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| Q |
312 |
ttttgttcttgtatttgtcttgtttcataatcactataaataatgttgattgaattcagatttcactacaattaaactcttggtaagtcaagaatgaaaa |
411 |
Q |
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| T |
24895520 |
ttttgttcatatatttatcttgtcccatgatcactataaataatgttgattgaattcagattttactacaattaaactccaagtaaatcaaccatgaaaa |
24895421 |
T |
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| Q |
412 |
ctaaacctttaatcttcgtgttct |
435 |
Q |
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| T |
24895420 |
ctaaaccgttgatcttcgtgttct |
24895397 |
T |
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