View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20552_low_8 (Length: 386)
Name: NF20552_low_8
Description: NF20552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20552_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 22 - 373
Target Start/End: Complemental strand, 10981159 - 10980809
Alignment:
| Q |
22 |
gacaagaagaaggctcttaaaactgtctcaacactttcaggtaccaaatcattatattttattgtttattttgggttgttctttgcaacttttctttcta |
121 |
Q |
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| T |
10981159 |
gacaagaagaaggctcttaaaacagtctcaacactttcaggtaccaaatcattatattttattgtttattttgggttgttctttgcaactttgctttcca |
10981060 |
T |
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| Q |
122 |
ttctcttaaaatatgaattagagaataatttgatatcgatatttatttgttttaaaatctccactatcttaagtgtatcatatttatttagtattttgag |
221 |
Q |
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| T |
10981059 |
ttctcttaaaatatgaattagagaataatttgatatcgatatttatttgttttaaaatctccactatcttaagtgtatcatatttatttagtattttgag |
10980960 |
T |
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| Q |
222 |
tcatnnnnnnntgtccatttagaattgaaattttttactaatatattttgtggtattgatgatattactaactatagaactttcattcctnnnnnnnnnn |
321 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
10980959 |
tcataaaaaaatgtccatttagaattgaaattttttactaatatattttgtggtattgatgattttactaactatagaactttcattcct-tattaaaaa |
10980861 |
T |
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| Q |
322 |
nnnnnnctattgaactttcatgatgatctgcctaattttaacccttgatcct |
373 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10980860 |
aaaaaactattgaactttcatgatgatctgcctaattttaacccttgatcct |
10980809 |
T |
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