View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20552_low_9 (Length: 376)
Name: NF20552_low_9
Description: NF20552
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20552_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 104; Significance: 9e-52; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 87 - 348
Target Start/End: Original strand, 15059331 - 15059600
Alignment:
| Q |
87 |
aactcatttctacttcaattactcatttataggttattatataatgtgcaagcat---tgactattgttgccactta-aaatttgttattgata-ttcct |
181 |
Q |
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| T |
15059331 |
aactcattgctacttcaattactcatttacatgttattatataatgtgcaagcattaatgattatttttaccacttataaatttgttattgatattttct |
15059430 |
T |
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| Q |
182 |
ttttaa-ttttaaaggttagggaccaaactcacaatttatcattgatattttatacaag--nnnnnnngttgtcttggcttattttttatgggactgatt |
278 |
Q |
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| T |
15059431 |
ttttaatttttaaaggcttggggccaaacttacaatttaccattgatattttatacaagctttttttttttgttttggcttattttttatgggactgatt |
15059530 |
T |
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| Q |
279 |
gagtatggaaaagggaaatgaagcaaaagtgtaaagcactatttatgcaacacgataccacaacaagttt |
348 |
Q |
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| T |
15059531 |
aagtatggaaaagggaagtggagcaaaagttcaaagcactatttaggcaacaaaacaccataacaagttt |
15059600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 74; Significance: 7e-34; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 250 - 347
Target Start/End: Complemental strand, 30859316 - 30859219
Alignment:
| Q |
250 |
gtcttggcttattttttatgggactgattgagtatggaaaagggaaatgaagcaaaagtgtaaagcactatttatgcaacacgataccacaacaagtt |
347 |
Q |
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| T |
30859316 |
gtcttggcttattttatatgggactgattgagtatggaaaagggaaatgaagcaaaagtataaagcactatttatacaagacgacaccacaagaagtt |
30859219 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 87 - 161
Target Start/End: Complemental strand, 30859533 - 30859459
Alignment:
| Q |
87 |
aactcatttctacttcaattactcatttataggttattatataatgtgcaagcattgactattgttgccacttaa |
161 |
Q |
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| T |
30859533 |
aactcatttctacttcaattactcatttataggttattatgtaatgagcaagcattgattattgttgccacttaa |
30859459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 256 - 306
Target Start/End: Complemental strand, 30879017 - 30878967
Alignment:
| Q |
256 |
gcttattttttatgggactgattgagtatggaaaagggaaatgaagcaaaa |
306 |
Q |
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| T |
30879017 |
gcttatttctgatggggctgattgagtatggaaaagggaaatggagcaaaa |
30878967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 188 - 227
Target Start/End: Complemental strand, 30859457 - 30859418
Alignment:
| Q |
188 |
ttttaaaggttagggaccaaactcacaatttatcattgat |
227 |
Q |
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| T |
30859457 |
ttttaaagttttgggaccaaactcacaatttatcattgat |
30859418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 117 - 153
Target Start/End: Complemental strand, 30855056 - 30855020
Alignment:
| Q |
117 |
aggttattatataatgtgcaagcattgactattgttg |
153 |
Q |
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| T |
30855056 |
aggttattaaataatgtgcaagcattgattattgttg |
30855020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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