View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20553_high_11 (Length: 461)
Name: NF20553_high_11
Description: NF20553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20553_high_11 |
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Alignment Details
Target: chr7 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 16 - 444
Target Start/End: Original strand, 28469718 - 28470145
Alignment:
| Q |
16 |
atcaccacacaactagagacataatacgattgatttagtcttaattgccgtttacaaagatataaaataaacaaacatcgatgtcacgagctagattgcg |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
28469718 |
atcaccacacaactagagacataatacgattgatttagtcttaattgccgttg-caaagatataaaataaactaacatcgatgtcacgagctagattgcg |
28469816 |
T |
|
| Q |
116 |
accattgacgtttctaaaatatattttactatcaaggatggttttaaattacggctgcacttacgctatatttcaacaaaatgccgagaaatgtgaccat |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
28469817 |
accattgacgtttctaaaatatattttactatcaaggatggttttaaattacggctgaacttacgctatatttcaacaaaatgccgagaaatgtgaccat |
28469916 |
T |
|
| Q |
216 |
tgcgattgaaattgtggtaacaaaacaggtacggagacgacaaattcctttgaagtttgtcgcaattatagttgtagaccgcaatttaaaaccacagtat |
315 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |
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| T |
28469917 |
tgcgattgaaattgtggtaacaaaacaggtacggggacgacaaattcctttgaagtttgtcgcaattagagttgtagaccgcaatttaaaaccacactat |
28470016 |
T |
|
| Q |
316 |
ctaatatacggggggtagagactaaagagtaactacttaaacaatatnnnnnnnnnnnnatttcgaatataaatacaaactttctgatcagttactgnnn |
415 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
28470017 |
ctaatatagggggggtagagactaaagagtaactacttaaacaatatcacacacacacaatttcgaatataaatacaaactttctgatcagttactgttt |
28470116 |
T |
|
| Q |
416 |
nnnnnnctagactcatagcagaagagaga |
444 |
Q |
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||||||||||||||||||||||| |
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| T |
28470117 |
ttttttctagactcatagcagaagagaga |
28470145 |
T |
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