View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20553_high_14 (Length: 458)
Name: NF20553_high_14
Description: NF20553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20553_high_14 |
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| [»] scaffold0028 (1 HSPs) |
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Alignment Details
Target: scaffold0028 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: scaffold0028
Description:
Target: scaffold0028; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 117 - 442
Target Start/End: Complemental strand, 123510 - 123185
Alignment:
| Q |
117 |
gcaaataagtttttcttctgggatcgtgagtgcaaccaattacttggaactacagctgccgatctgcaaagggttatgattgaggtttctatttattgat |
216 |
Q |
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| T |
123510 |
gcaactaagtttttcttctgggatcgtgagtgcaatcaattgcttggaactacagctgctgatctgcaaagggttatgattgaggtttctatttattgat |
123411 |
T |
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| Q |
217 |
ttttatattatagtcttaatctattatccacaacttttggaataacacttgcaattaggctggtgtcacaaatcctttggaatagccaattcttctggac |
316 |
Q |
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| T |
123410 |
ttttatattatagtcttaatttattatccacaacttttggaataacacttgcaattaggctggtgtcacaaatcctttggaatatccaattcatctggac |
123311 |
T |
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| Q |
317 |
cgattggaaaatagaaagttggtttgtaaagttaagtggcagccatcttgggacagttgttcagttcaagcagtcaaggaagatgaaggtttgatagaaa |
416 |
Q |
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| T |
123310 |
caattggaaaatagaaagttggtttgtaaagttaagtggcagccatcttgggacagttgttcagttcaagcagtcaaggaagatgaaggtttgatagaaa |
123211 |
T |
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| Q |
417 |
agatcaaagaattgttcccaaaaaat |
442 |
Q |
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| T |
123210 |
agatcaaagaattgttcccaaaaaat |
123185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 90; Significance: 3e-43; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 265 - 438
Target Start/End: Complemental strand, 23697143 - 23696970
Alignment:
| Q |
265 |
ttgcaattaggctggtgtcacaaatcctttggaatagccaattcttctggaccgattggaaaatagaaagttggtttgtaaagttaagtggcagccatct |
364 |
Q |
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| T |
23697143 |
ttgcatttaggctggtgtcacaaatccattggaatatccaatactactggactaattggaaaaaagaaatgtcgtctgtaaagtgaagtggcagccaact |
23697044 |
T |
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| Q |
365 |
tgggacagttgttcagttcaagcagtcaaggaagatgaaggtttgatagaaaagatcaaagaattgttcccaaa |
438 |
Q |
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| T |
23697043 |
tgggacagttgttcagtgcaagcaatcaaggaggatgaaggtttgattgagaagatcatataattgttcccaaa |
23696970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 133 - 204
Target Start/End: Complemental strand, 23697278 - 23697207
Alignment:
| Q |
133 |
tctgggatcgtgagtgcaaccaattacttggaactacagctgccgatctgcaaagggttatgattgaggttt |
204 |
Q |
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| T |
23697278 |
tctgggatcgtgagtgcaatgaattgcttggaactacagctgcggatcttcaaagggccatgactgaggttt |
23697207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 87; Significance: 2e-41; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 272 - 442
Target Start/End: Complemental strand, 22078130 - 22077961
Alignment:
| Q |
272 |
taggctggtgtcacaaatcctttggaatagccaattcttctggaccgattggaaaatagaaagttggtttgtaaagttaagtggcagccatcttgggaca |
371 |
Q |
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||||||||||||||||||||| ||||||| |||| | |||||| ||||||||| ||| |||| ||||||||||||| ||||||||| ||||||||| |
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| T |
22078130 |
taggctggtgtcacaaatcctctggaata-ccaacacacttggaccaattggaaaacagagagtttatttgtaaagttaaatggcagccaacttgggaca |
22078032 |
T |
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| Q |
372 |
gttgttcagttcaagcagtcaaggaagatgaaggtttgatagaaaagatcaaagaattgttcccaaaaaat |
442 |
Q |
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| T |
22078031 |
gctgttcggttcaagcaatcaaggaagatgaaggtttaattgaaaagatcaaagcattgttcccaaaaaat |
22077961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 117 - 190
Target Start/End: Complemental strand, 22078290 - 22078217
Alignment:
| Q |
117 |
gcaaataagtttttcttctgggatcgtgagtgcaaccaattacttggaactacagctgccgatctgcaaagggt |
190 |
Q |
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|||| ||| |||||| | ||||||||||||||||| |||| ||||||||||||||||| ||||| |||||||| |
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| T |
22078290 |
gcaactaaatttttcctatgggatcgtgagtgcaatgaattgcttggaactacagctgctgatcttcaaagggt |
22078217 |
T |
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