View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20553_high_15 (Length: 451)
Name: NF20553_high_15
Description: NF20553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20553_high_15 |
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Alignment Details
Target: chr2 (Bit Score: 285; Significance: 1e-159; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 21 - 431
Target Start/End: Original strand, 35409774 - 35410193
Alignment:
| Q |
21 |
agagggatttgctagttatgagaaaaatttagaagacaaggccaaggtg-----------------gaacaactctccttttaagtttgtcttcttataa |
103 |
Q |
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| T |
35409774 |
agagggatttgctagttatgagaaaaacttagaagacaaggccaaggtgaaaagacaatgtaagtggaacaaatctccctttaagtttgtcttcttataa |
35409873 |
T |
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| Q |
104 |
acttcacttcttaccatttcaataacctactgaatataatagaaccaagtcttttaagaagtagagttataaaaattatcattttatctcattattatta |
203 |
Q |
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| T |
35409874 |
acttcacttcttaccatttcaataacctattgaatataatagaaccaagtcttttaagaagtagagttataaaagttatcattgtatctcattattatta |
35409973 |
T |
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| Q |
204 |
catgataatattgctttttgttagacctgaaacatcgcatgcaaagttttttatgtttggaaaatgagtttatttatcagtcatgctacaactgatacca |
303 |
Q |
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| T |
35409974 |
catgataatattgctttttgttagacctgaaacatcgcatgcaaagtttttgatgtttggaaaatgagtttatttattagtcatgc---------tacta |
35410064 |
T |
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| Q |
304 |
ttacaagagtgttcatatatatgcaactattcagactcctttcattgtttgac-aagccattagtttctcaaaggatcttcctctaatctttcattaaaa |
402 |
Q |
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| T |
35410065 |
ttacaagagtgttcatctatatgcaactattcagactcctttcattgtttgacaaagccattagtttctcaaaggatcttcctttaatctttcattaaaa |
35410164 |
T |
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| Q |
403 |
ccatatgaataatgttaagaacacattct |
431 |
Q |
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| T |
35410165 |
ccatatgaataatgttaagaacatattct |
35410193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 338 - 432
Target Start/End: Complemental strand, 29159867 - 29159771
Alignment:
| Q |
338 |
actcctttcattgtttgacaagccattagtttctcaaaggatcttcctctaat--ctttcattaaaaccatatgaataatgttaagaacacattctc |
432 |
Q |
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| T |
29159867 |
actcctttcattgttttacaagccatcagtttctcaaagtattttccattaatatctttcattaaaacaatatgaataatattaagaacacattctc |
29159771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 187 - 289
Target Start/End: Complemental strand, 29159982 - 29159878
Alignment:
| Q |
187 |
ttatctcattattattacatgataatattgctttttgttagacctgaaacatcgcatgcaaagttttttatgtttgg----aaaatgagtttatttatca |
282 |
Q |
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| T |
29159982 |
ttatctcattattattacatgataatattgctttttgttagacttgaaacatcacattcta--gtttttatatttggaaaaaaaatgagtttatttatca |
29159885 |
T |
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| Q |
283 |
gtcatgc |
289 |
Q |
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| T |
29159884 |
gttatgc |
29159878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 67 - 162
Target Start/End: Complemental strand, 29160136 - 29160040
Alignment:
| Q |
67 |
gtggaacaactct-ccttttaagtttgtcttcttataaacttcacttcttaccatttcaataacctactgaatataatagaaccaagtcttttaaga |
162 |
Q |
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| T |
29160136 |
gtgggacaactcttccgtttaaatttgtctccttgtaaacttcaattcttaccatttcaattacctagcgggtagaatagaaccaagtcttttaaga |
29160040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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