View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20553_high_25 (Length: 345)

Name: NF20553_high_25
Description: NF20553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20553_high_25
NF20553_high_25
[»] chr3 (8 HSPs)
chr3 (1-327)||(23036892-23037218)
chr3 (1-327)||(23039769-23040095)
chr3 (2-327)||(23146644-23146969)
chr3 (1-313)||(23033589-23033901)
chr3 (1-327)||(23017978-23018304)
chr3 (1-137)||(23025185-23025321)
chr3 (1-137)||(23141182-23141318)
chr3 (3-137)||(23149792-23149926)
[»] scaffold0554 (1 HSPs)
scaffold0554 (4-298)||(5471-5765)
[»] chr6 (1 HSPs)
chr6 (1-314)||(21780672-21780985)
[»] chr1 (1 HSPs)
chr1 (189-298)||(12610775-12610884)


Alignment Details
Target: chr3 (Bit Score: 315; Significance: 1e-177; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 327
Target Start/End: Complemental strand, 23037218 - 23036892
Alignment:
Q  1 ccaatcttgtcaaatggattgcttcacagaaaggaactccaatcaatatctctgaagctgtactttcaactatgtacacaattgtttcgaggtctgcgtt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23037218 ccaatcttgtcaaatggattgcttcacagaaaggaactccaatcaatatctctgaagctgtactttcaactatgtacacaattgtttcgaggtctgcgtt 23037119  T
Q  101 tggcaatgaatgcaaagaccaagaaaaatttatatcattggtaagacaaaccataaaggttgcagggggttttaacttgggagatttgtttccctcagct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23037118 tggcaatgaatgcaaagaccaagaaaaatttatatcattggtaagacaaaccataaaggttgcagggggttttaacttgggagatttgtttccctcagct 23037019  T
Q  201 aaatggctacagtgtattactggtttgaggcctaagctagagaggattcatcggcaaactgatcagatattagaaaacatcatcaatgagcataaagagg 300  Q
    |||||||||||| ||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  23037018 aaatggctacagcgtattactggtttgaggcctaagctggagaggattcatcgacaaactgatcagatattagaaaacatcatcaatgagcataaagagg 23036919  T
Q  301 aaaagtacacaaaagccaaagatgatc 327  Q
    |||||||||||||||||||||||||||    
T  23036918 aaaagtacacaaaagccaaagatgatc 23036892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 327
Target Start/End: Complemental strand, 23040095 - 23039769
Alignment:
Q  1 ccaatcttgtcaaatggattgcttcacagaaaggaactccaatcaatatctctgaagctgtactttcaactatgtacacaattgtttcgaggtctgcgtt 100  Q
    ||||||||||||||||||||||||||| | | |||| ||||||||| ||  |||||||||||| |||  | || |||||||||||||| ||| |||| ||    
T  23040095 ccaatcttgtcaaatggattgcttcacgggacggaattccaatcaacattactgaagctgtacgttcttcaatatacacaattgtttcaagggctgcctt 23039996  T
Q  101 tggcaatgaatgcaaagaccaagaaaaatttatatcattggtaagacaaaccataaaggttgcagggggttttaacttgggagatttgtttccctcagct 200  Q
    ||||||||||||||| |||||||| |||||||||||| |||||| |||| | ||||||||||| ||||||||| ||||||||||||||||||||||||||    
T  23039995 tggcaatgaatgcaaggaccaagacaaatttatatcagtggtaaaacaatcaataaaggttgccgggggttttgacttgggagatttgtttccctcagct 23039896  T
Q  201 aaatggctacagtgtattactggtttgaggcctaagctagagaggattcatcggcaaactgatcagatattagaaaacatcatcaatgagcataaagagg 300  Q
    |||||| |||||  | |||||||| ||||||||||||| |||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  23039895 aaatggttacagcttgttactggtatgaggcctaagcttgagaggtttcatcgacaaactgatcagatattagaaaacatcatcaatgagcataaagagg 23039796  T
Q  301 aaaagtacacaaaagccaaagatgatc 327  Q
    |||||||||||||||||||||||||||    
T  23039795 aaaagtacacaaaagccaaagatgatc 23039769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 2 - 327
Target Start/End: Complemental strand, 23146969 - 23146644
Alignment:
Q  2 caatcttgtcaaatggattgcttcacagaaaggaactccaatcaatatctctgaagctgtactttcaactatgtacacaattgtttcgaggtctgcgttt 101  Q
    |||||||| |||||||||||| ||||||   |||| ||||||||| ||  |||||||||||| |||  | || |||||||||||||||||| |||| |||    
T  23146969 caatcttgccaaatggattgcctcacaggtcggaattccaatcaacattactgaagctgtacgttcgtcaatatacacaattgtttcgagggctgctttt 23146870  T
Q  102 ggcaatgaatgcaaagaccaagaaaaatttatatcattggtaagacaaaccataaaggttgcagggggttttaacttgggagatttgtttccctcagcta 201  Q
    ||||||||||||||||||||||| |||||||||||| |||||| |||| | ||||||||||||||||||||| |||||||||||||||||||||||||||    
T  23146869 ggcaatgaatgcaaagaccaagataaatttatatcagtggtaaaacaatcaataaaggttgcagggggttttgacttgggagatttgtttccctcagcta 23146770  T
Q  202 aatggctacagtgtattactggtttgaggcctaagctagagaggattcatcggcaaactgatcagatattagaaaacatcatcaatgagcataaagagga 301  Q
    ||||| |||||  | |||||||| ||||||||||||| |||||| ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||    
T  23146769 aatggttacagcttgttactggtatgaggcctaagcttgagaggtttcatcgacaaactgatcagatatttgaaaacatcatcaatgagcataaagagga 23146670  T
Q  302 aaagtacacaaaagccaaagatgatc 327  Q
    ||||||||||||||||||||||||||    
T  23146669 aaagtacacaaaagccaaagatgatc 23146644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 1 - 313
Target Start/End: Complemental strand, 23033901 - 23033589
Alignment:
Q  1 ccaatcttgtcaaatggattgcttcacagaaaggaactccaatcaatatctctgaagctgtactttcaactatgtacacaattgtttcgaggtctgcgtt 100  Q
    ||||||||||||||  ||||||||| ||||| ||| | ||  ||||  |  ||||||||||| ||||  | || |||||||||||||| ||| | || ||    
T  23033901 ccaatcttgtcaaaacgattgcttcgcagaatggatcacccttcaaccttactgaagctgtaatttcttcaatatacacaattgtttcaagggccgcctt 23033802  T
Q  101 tggcaatgaatgcaaagaccaagaaaaatttatatcattggtaagacaaaccataaaggttgcagggggttttaacttgggagatttgtttccctcagct 200  Q
    |||||||||||||| |||||||||||||||||||||  |||||| ||||||  ||||| ||||||| |||||||||||||||||||||||||| ||  ||    
T  23033801 tggcaatgaatgcagagaccaagaaaaatttatatcggtggtaaaacaaacactaaagattgcaggaggttttaacttgggagatttgtttccttcttct 23033702  T
Q  201 aaatggctacagtgtattactggtttgaggcctaagctagagaggattcatcggcaaactgatcagatattagaaaacatcatcaatgagcataaagagg 300  Q
    |||||||| ||   | |||||||| | ||||||||||| |||| | ||||||| |||| |||| |||| || |||||||||||| ||||||||||| |||    
T  23033701 aaatggcttcaacatgttactggtattaggcctaagcttgagaagtttcatcgacaaaatgatgagatgtttgaaaacatcatcgatgagcataaaaagg 23033602  T
Q  301 aaaagtacacaaa 313  Q
     ||||||||||||    
T  23033601 caaagtacacaaa 23033589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 1 - 327
Target Start/End: Complemental strand, 23018304 - 23017978
Alignment:
Q  1 ccaatcttgtcaaatggattgcttcacagaaaggaactccaatcaatatctctgaagctgtactttcaactatgtacacaattgtttcgaggtctgcgtt 100  Q
    |||||||| |||| | |||||||||| |||| ||| | ||||||||  || ||||||||||||||||  | || |||||||||||||| ||| |||| ||    
T  23018304 ccaatcttatcaagtcgattgcttcagagaatggatcgccaatcaacttcactgaagctgtactttcttcgatatacacaattgtttcaagggctgcctt 23018205  T
Q  101 tggcaatgaatgcaaagaccaagaaaaatttatatcattggtaagacaaaccataaaggttgcagggggttttaacttgggagatttgtttccctcagct 200  Q
    ||||||| ||||||||||||||||||||||||||||| |||||| | || |  ||||| ||||||  |||||| |||||||||||| |||||| ||  ||    
T  23018204 tggcaataaatgcaaagaccaagaaaaatttatatcagtggtaaaagaatctgtaaagattgcagcaggttttgacttgggagattcgtttccttcttct 23018105  T
Q  201 aaatggctacagtgtattactggtttgaggcctaagctagagaggattcatcggcaaactgatcagatattagaaaacatcatcaatgagcataaagagg 300  Q
    |||||||| || | | |||| ||||||||||||||| | ||||   ||||||  ||||| ||| |||||||||| ||||||||  |||| ||||||  ||    
T  23018104 aaatggcttcaatatgttaccggtttgaggcctaagattgagaaatttcatcaacaaaccgatgagatattagagaacatcattgatgaacataaaaggg 23018005  T
Q  301 aaaagtacacaaaagccaaagatgatc 327  Q
    ||||||||||||||| ||||| |||||    
T  23018004 aaaagtacacaaaagtcaaaggtgatc 23017978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 23025321 - 23025185
Alignment:
Q  1 ccaatcttgtcaaatggattgcttcacagaaaggaactccaatcaatatctctgaagctgtactttcaactatgtacacaattgtttcgaggtctgcgtt 100  Q
    |||||||||||||||||||||||||  || ||||| | || |||||  || || |||||||||||||  | || ||||| |||||||| |  ||||| ||    
T  23025321 ccaatcttgtcaaatggattgcttcgaaggaaggatcacccatcaacctcactcaagctgtactttcttcaatatacactattgtttcaaaatctgcctt 23025222  T
Q  101 tggcaatgaatgcaaagaccaagaaaaatttatatca 137  Q
    ||||||  ||| |||||||||||||||||||||||||    
T  23025221 tggcaagaaattcaaagaccaagaaaaatttatatca 23025185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 23141318 - 23141182
Alignment:
Q  1 ccaatcttgtcaaatggattgcttcacagaaaggaactccaatcaatatctctgaagctgtactttcaactatgtacacaattgtttcgaggtctgcgtt 100  Q
    |||||||||||||||||||  ||||| |||||||| |  | |||||  || || |||||||||||||  | || ||||| ||| |||| |  ||||| ||    
T  23141318 ccaatcttgtcaaatggataacttcaaagaaaggatcatccatcaacctcactcaagctgtactttcttcaatatacactattctttcaaaatctgcatt 23141219  T
Q  101 tggcaatgaatgcaaagaccaagaaaaatttatatca 137  Q
    ||||||  | ||||| |||||||| ||||||||||||    
T  23141218 tggcaagaagtgcaacgaccaagacaaatttatatca 23141182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 137
Target Start/End: Complemental strand, 23149926 - 23149792
Alignment:
Q  3 aatcttgtcaaatggattgcttcacagaaaggaactccaatcaatatctctgaagctgtactttcaactatgtacacaattgtttcgaggtctgcgtttg 102  Q
    |||||||||||||||||||||||  || ||||| | || |||||  || || |||||||| |||| |  || ||||| |||||||| |   |||| ||||    
T  23149926 aatcttgtcaaatggattgcttcgaaggaaggatcacccatcaacctcactcaagctgtaatttctataatatacaccattgtttcaaaagctgcctttg 23149827  T
Q  103 gcaatgaatgcaaagaccaagaaaaatttatatca 137  Q
    ||||  | | |||||||||||| ||||||||||||    
T  23149826 gcaagaagttcaaagaccaagacaaatttatatca 23149792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0554 (Bit Score: 139; Significance: 1e-72; HSPs: 1)
Name: scaffold0554
Description:

Target: scaffold0554; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 4 - 298
Target Start/End: Original strand, 5471 - 5765
Alignment:
Q  4 atcttgtcaaatggattgcttcacagaaaggaactccaatcaatatctctgaagctgtactttcaactatgtacacaattgtttcgaggtctgcgtttgg 103  Q
    ||||||||||||||||||||||| |||| ||| | ||||||||| || |  ||||| || ||||  | || |||||||||||||||||| | || |||||    
T  5471 atcttgtcaaatggattgcttcagagaacggatcaccaatcaatctcacaaaagctttaatttcttcaatatacacaattgtttcgagggcagcctttgg 5570  T
Q  104 caatgaatgcaaagaccaagaaaaatttatatcattggtaagacaaaccataaaggttgcagggggttttaacttgggagatttgtttccctcagctaaa 203  Q
    |||| ||||||||||||||||||||||||||||| |||||| |||||| |||| | ||||||| |||||| ||||||||||||||||||| || ||||||    
T  5571 caataaatgcaaagaccaagaaaaatttatatcagtggtaaaacaaacaataaggattgcaggaggttttgacttgggagatttgtttccatctgctaaa 5670  T
Q  204 tggctacagtgtattactggtttgaggcctaagctagagaggattcatcggcaaactgatcagatattagaaaacatcatcaatgagcataaaga 298  Q
    ||||||||     |||||||||||||||||||||| |||| | ||||||| ||||||||||| ||| | ||||||||||||||||||||||||||    
T  5671 tggctacaacaagttactggtttgaggcctaagcttgagatgcttcatcgacaaactgatcaaatacttgaaaacatcatcaatgagcataaaga 5765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 102; Significance: 1e-50; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 1 - 314
Target Start/End: Complemental strand, 21780985 - 21780672
Alignment:
Q  1 ccaatcttgtcaaatggattgcttcacagaaaggaactccaatcaatatctctgaagctgtactttcaactatgtacacaattgtttcgaggtctgcgtt 100  Q
    |||||||||||| |||||||| ||||||||| ||| | ||||||||  || || ||||||||  |||  |  | ||||| |||||||||||||| || ||    
T  21780985 ccaatcttgtcagatggattgtttcacagaatggatcgccaatcaacctcactcaagctgtaacttcttcagtatacactattgtttcgaggtccgcctt 21780886  T
Q  101 tggcaatgaatgcaaagaccaagaaaaatttatatcattggtaagacaaaccataaaggttgcagggggttttaacttgggagatttgtttccctcagct 200  Q
    ||| ||| ||||||||||||||||||||||||||||| |  ||| |||| | ||||| ||| |||  |||||||| ||||||||||||||||| ||  ||    
T  21780885 tggaaataaatgcaaagaccaagaaaaatttatatcagttataaaacaatcgataaaagtttcagcaggttttaatttgggagatttgtttccttctact 21780786  T
Q  201 aaatggctacagtgtattactggtttgaggcctaagctagagaggattcatcggcaaactgatcagatattagaaaacatcatcaatgagcataaagagg 300  Q
    |||||| |  |   | ||||||| |||||||||||||| |||||  |||| || ||||||||||||||||| |||||||||||||| || ||||||||||    
T  21780785 aaatggattgaacatgttactggattgaggcctaagcttgagagttttcaacgacaaactgatcagatatttgaaaacatcatcaaggaccataaagagg 21780686  T
Q  301 aaaagtacacaaaa 314  Q
     |||| ||||||||    
T  21780685 caaagcacacaaaa 21780672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 298
Target Start/End: Complemental strand, 12610884 - 12610775
Alignment:
Q  189 tttccctcagctaaatggctacagtgtattactggtttgaggcctaagctagagaggattcatcggcaaactgatcagatattagaaaacatcatcaatg 288  Q
    ||||| ||||| |||||||| ||  || || | |||||||||||||| || |||||| | ||| |||||| |||||| ||| ||||||||||  ||| ||    
T  12610884 tttccttcagcgaaatggcttcaacgtgtttccggtttgaggcctaaactggagaggttgcataggcaaattgatcaaatactagaaaacattgtcactg 12610785  T
Q  289 agcataaaga 298  Q
    | ||||||||    
T  12610784 aacataaaga 12610775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University