View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20553_high_33 (Length: 305)
Name: NF20553_high_33
Description: NF20553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20553_high_33 |
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Alignment Details
Target: chr2 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 18 - 292
Target Start/End: Original strand, 40216763 - 40217035
Alignment:
| Q |
18 |
atattattagcacaagttataaatatattaagtgataagttataaacgttctttaagaaagtcagtagcccattctcttaaaatgaaagtctagtagccc |
117 |
Q |
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| T |
40216763 |
atattattagcacaagttataaatat--taagtgataagttataaacgttctttaagaaagtcagtagcccattatcttaaaatgaaagtctagtagccc |
40216860 |
T |
|
| Q |
118 |
attctctgatagcatgataaccagatttatcctcataattaccatatgttgttccataccaagttaattataccatcaggttcgttagtatttgtaatga |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40216861 |
attctctgatagcatgataaccagatttatcctcataattaccatatgttgttccataccaagttaattataccatcaggttcgttagtatttgtaatga |
40216960 |
T |
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| Q |
218 |
ggatttagataatctacctagcttcaaaagggaggaacatgttattgatggtatcagtattccaactcagtgttc |
292 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40216961 |
ggatttagataatctacctagcttcaaaagggaggaacatgttattgatggtatcagtattccaactcagtgttc |
40217035 |
T |
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