View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20553_high_49 (Length: 240)
Name: NF20553_high_49
Description: NF20553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20553_high_49 |
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Alignment Details
Target: chr8 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 149 - 203
Target Start/End: Original strand, 26725294 - 26725348
Alignment:
| Q |
149 |
catcaaagatatggttgatgataccacattcaattctttcagtttctgaccacat |
203 |
Q |
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| T |
26725294 |
catcaaagatatggtcgatgataccacattcaattctttcagtttctgaccacat |
26725348 |
T |
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Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 43 - 90
Target Start/End: Complemental strand, 21769919 - 21769872
Alignment:
| Q |
43 |
tgccatgaattatatctcaacaattttcaaaacctacaaaccaaaact |
90 |
Q |
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| T |
21769919 |
tgccatgaatcatatctcaacaattttcaaaacctacaaaccaaaact |
21769872 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 44 - 90
Target Start/End: Original strand, 13550604 - 13550650
Alignment:
| Q |
44 |
gccatgaattatatctcaacaattttcaaaacctacaaaccaaaact |
90 |
Q |
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| T |
13550604 |
gccatgaatcatatctcaacaattttcaaaacctacaaaccaaaact |
13550650 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 43 - 81
Target Start/End: Original strand, 13534806 - 13534844
Alignment:
| Q |
43 |
tgccatgaattatatctcaacaattttcaaaacctacaa |
81 |
Q |
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| T |
13534806 |
tgccatgaatcatatctcaacaattttcaaaacctacaa |
13534844 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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