View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20553_high_50 (Length: 240)
Name: NF20553_high_50
Description: NF20553
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20553_high_50 |
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Alignment Details
Target: chr3 (Bit Score: 160; Significance: 2e-85; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 15 - 222
Target Start/End: Original strand, 4141058 - 4141258
Alignment:
| Q |
15 |
gaggcattgcggtgcaaagtgaaagccgagtttaaaagcaaaactgctactgctaaggtgcggaacat-ctttcttcttgtttcaaacgctttaacgggg |
113 |
Q |
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| T |
4141058 |
gaggcattgcggtgcaaagtgaaagccgagtttaaaagcaaaaatgctactgctaaggtgcggaacatcctttcttcttgtttcaaacgctttaacgggg |
4141157 |
T |
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| Q |
114 |
ttatcaattctaaaatgcaaaaattagttgaaagatttgagtttttgagaaaacagaaacttggattaaaagaaggtatttctaccggtgtttggcatgg |
213 |
Q |
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| T |
4141158 |
ttatcaatactaaaatgcaaaaattatttgaaaga--------tttgagaaaacagaaacttggattaaaagaaggtatttctaccggtgtttggcatgg |
4141249 |
T |
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| Q |
214 |
gactcctac |
222 |
Q |
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| T |
4141250 |
gactcctac |
4141258 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 119 - 222
Target Start/End: Complemental strand, 4115618 - 4115515
Alignment:
| Q |
119 |
aattctaaaatgcaaaaattagttgaaagatttgagtttttgagaaaacagaaacttggattaaaagaaggtatttctaccggtgtttggcatgggactc |
218 |
Q |
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| T |
4115618 |
aattctaaattgcaaaagttacttgaaagattagaacatttgagaaaccagaatcttggtttaaaagaaggtgtttccaacagtgtttggcatggaactc |
4115519 |
T |
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| Q |
219 |
ctac |
222 |
Q |
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|||| |
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| T |
4115518 |
ctac |
4115515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 119 - 222
Target Start/End: Complemental strand, 4092874 - 4092771
Alignment:
| Q |
119 |
aattctaaaatgcaaaaattagttgaaagatttgagtttttgagaaaacagaaacttggattaaaagaaggtatttctaccggtgtttggcatgggactc |
218 |
Q |
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| T |
4092874 |
aattctaaattgcaaaagttacttgaaagattagaacatttgagaaaccagaatcatggtttaaaagaaggtgtttccaacagtgtttggcatggaactc |
4092775 |
T |
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| Q |
219 |
ctac |
222 |
Q |
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|||| |
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| T |
4092774 |
ctac |
4092771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 116 - 208
Target Start/End: Original strand, 4123923 - 4124015
Alignment:
| Q |
116 |
atcaattctaaaatgcaaaaattagttgaaagatttgagtttttgagaaaacagaaacttggattaaaagaaggtatttctaccggtgtttgg |
208 |
Q |
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| T |
4123923 |
atcaattctaaactgcaaaaattatttgaaacattagaacttttgagaaaccagaatcttggcttgaaagaaggtgtttccagcagtgtttgg |
4124015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 150
Target Start/End: Original strand, 5965309 - 5965375
Alignment:
| Q |
84 |
tttcttcttgtttcaaacgctttaacggggttatcaattctaaaatgcaaaaattagttgaaagatt |
150 |
Q |
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| T |
5965309 |
tttcttcttctttcaaatgctttaatggagtgacgaattctaaattgcaaaaattaattgaaagatt |
5965375 |
T |
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